Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3918g00002 ATGTCCTCAAAATACGACTTCGTAAAGGATCTTAATCCGACGAAAGAAGAGTGGAGGATTAAAGTGCGTGTAGTTAGGTGTTGGAAGGTTCCCAATTTTAATCAAAAAGATTTTGATGACAATGTGGATATGGTTTTGGTCGACGAACAGGGTGTAAGGATCCATGCTACGGCCAAGGGTACTTTGCAGGTTCGAAAGAAAATTCGTGAGGGTGATGCTTATTTTATAAAAAAATTTGGAGTTGGGTTGAATACGGGTAATTTCAGGCCAACACGGCATGAATATCGTCTGCCTTTCAACTTAAGGACGGACGTGAAATCCATTATTGATGCTACGATTCCTGAGCGTGGTTTTGATTTTGCTGAGTTTGACGTTATTGAGAAAGAATCCTCTGACTCTCCTTATTTAATAGGTGATGGGATTGATGTATTGTGTTATTCGCTTTCAATTAAGATTTTGTATATAGGACGTAAGGCTGAAACCCATGTTATTTGTTGTGTAGACGTCATTGGTTTGCTGTCTGAAATTGGGGAAGTACGTGGACATGTCATCTCTGGTAGGAATACAAAAATGGTTGTCGTGGAGCTTGACAACCTGAGGGGTCAGAAACTTGAATGCACTTTGTGGGAGTCATACGTAGACGAGGTCCAAACTTTCTTAGCAAAGAATCAAAGTGCTCAAAATGTTATAATACTTCAGCTTGCAAGGATAAAGGGTTTTAGGGGACAGATTGGAATAGCTAATACAAAGTATACGACGAAAATTCTTTTTGATTCCAATATACCTGAGATCGTAGAGTTCAAAAAAAGGCTTTCCGATGATCTGATGGAAAGTAGTCAGATGTTGACTCAGTTGTCCAGCCCATCTTCATATTCTTATGAAAATGATTTTCTCAAGGATACAGAGATGAAATTTCTTACTGATATTAAGAATTGCATAGATGCTACTACTTGCATTACTTATGGAACTGTAAAATCCATCGAAAGTAAATACAACTGGTGGTACAAGTCCTGTAAGAAATGTCCATATTCAGTGTGCGAATATTTTGAGAAATGGTATTGTAAGAACTGTCAGAAACATTGGAATGAATATACTCCGAAGTTCAGTGTTCAAGTCAGAGTTGTTGATAACACAGATTCTGCTTCTTTCGTACTATTTGATAGAGACTGTCTTTCTTTATTAGGAGTGAGTGCTGCTGAATTGCGCGAGCAACATTTTAAGCGGGATGATTCTGTATTTGACAGTCCTCCTGATGATAATATTATGTCGATAGGGTCAGGAAAAGCTGTGGATGTTCAGAGCCAAACCTGTGATAGTACTGATGATGCTGATATTTCTCTCACTTTGTTGTCACCGTCTGTGAAGTATGGTGATGTTGTTGAAGATAAAAATAATTCCGGTGACACTTTGGAGCAGAAAGAAAATCTGTAA 1431 0.3829 MSSKYDFVKDLNPTKEEWRIKVRVVRCWKVPNFNQKDFDDNVDMVLVDEQGVRIHATAKGTLQVRKKIREGDAYFIKKFGVGLNTGNFRPTRHEYRLPFNLRTDVKSIIDATIPERGFDFAEFDVIEKESSDSPYLIGDGIDVLCYSLSIKILYIGRKAETHVICCVDVIGLLSEIGEVRGHVISGRNTKMVVVELDNLRGQKLECTLWESYVDEVQTFLAKNQSAQNVIILQLARIKGFRGQIGIANTKYTTKILFDSNIPEIVEFKKRLSDDLMESSQMLTQLSSPSSYSYENDFLKDTEMKFLTDIKNCIDATTCITYGTVKSIESKYNWWYKSCKKCPYSVCEYFEKWYCKNCQKHWNEYTPKFSVQVRVVDNTDSASFVLFDRDCLSLLGVSAAELREQHFKRDDSVFDSPPDDNIMSIGSGKAVDVQSQTCDSTDDADISLTLLSPSVKYGDVVEDKNNSGDTLEQKENL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3918g00002 476 CDD RPA1_DBD_C 318 414 IPR047192 -
Gabi3918g00002 476 PANTHER OS03G0429900 PROTEIN 8 439 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi3918g00002 476 Pfam Replication factor-A C terminal domain 320 410 IPR013955 -
Gabi3918g00002 476 Gene3D - 7 111 IPR012340 -
Gabi3918g00002 476 Pfam Domain of unknown function DUF223 44 133 IPR003871 -
Gabi3918g00002 476 SUPERFAMILY Nucleic acid-binding proteins 6 110 IPR012340 -
Gabi3918g00002 476 CDD RPA1_DBD_B_like 168 271 - -
Gabi3918g00002 476 CDD RPA1_DBD_A_like 19 105 - -
Gabi3918g00002 476 Gene3D - 112 279 IPR012340 -
Gabi3918g00002 476 Gene3D - 293 426 IPR012340 -
Gabi3918g00002 476 SUPERFAMILY Nucleic acid-binding proteins 303 407 IPR012340 -
Gabi3918g00002 476 SUPERFAMILY Nucleic acid-binding proteins 167 273 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3918g00002 Gabi-Chr3918 29248 31748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3918g00002 1 401 Core DNA Replication Machinery Family AT5G08020 21.498 7.81e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3918g00002 - - adu:107477146 258.84