Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3916g00005 ATGGCCATGGATCCCACTAAGAAGCGCAAGCTCGACGAGAACGGCTTCGGCGACGCCGATTCAGAACATCTCAATCTCTCTCCCTCCGAAGCGCGCAAGATGATGGAGCGTTTCACCCACGACCAGCTCCTCGACATCCTCCAGGACGCCGCCGTCCGCCACCCTGACGTCCTCAACTCCGTCCGCATCGTGGCCGACCCCGACGTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACAACCACCGACGGCCTTCGCTCCCTCTTCTCCGCCTTCGGCCTCCTCGAGGAGGCCGTCGTCATCCTCGACAAGGCCACCGGAAAGTCCAAGGGCTACGGTTTCGTCACGTTCCGCCACGTTGATGGTGCTCTCCTCGCTCTTAGGGAGCCAAGCAAAAGGATCGACGGCCGCGTCACCGTCACGCAGCTCGCTGCGGCGGGGAATTCCGGTTCCAACACCAACGCCGCCGACATTGCGCTTCGAAAGATTTACGTTGCTAACGTGCCGCCGGATCTCCCGGCGGATAAGCTGCTGGCACACTTCTCCGTCTATGGTGAAATCGAGGAGGGGCCGTTAGGGTTTGACAAGCAGACTGGAAAATCAAAAGGGTTTGCGCTTTTTGTGTACAAGACTCCTGAGGGGGCACAGGCAGCACTATTGGAGCCGGTGAAGAACGTGGAGGGGAGGCAGCTGAATTGCAAGCTCGCGATAACTGACGGGAAGCAAGGGAAGCGCGGTGGGCCTGGGCCTGTTGGGCCGGATGGAGTTCAGGGTCATGGGAACGCTCATCATGGTCATGGGGATGGGATGGGGTTGGCTCCTTCAGCGGGTTCTGGGCCTGGGTCGCTTTCGGGTCAGTATGGTGGTCCGGTTGGTTTGGGTTCTTATGGTGGGTTTCCTGGTGGACTTCAGGGTCAACCTCCGATGGGTAACCATCCTCTGAATTCGTCTGTTGGTGGGTTGTCTTCGATGGGGAATCAGGCGCCTTCGGCTATGGGAAGTGCTGGCGGTTACGGTGCTGGGCTGGGTGGTCATTATGGTGGCTATGGTGGGCCCGGGTCGACAGGTTTTGGTGGATTGGGTGGTGGTGGTGGTGGTGGTTTGGGAGGAGGTAGTGGTGGTGTTGGTGCTGGAGTTGGTGGTGGTGCTGGTGGACTTGGTGGTTCTGGTGGTGCTTTAGGTGGAGCTGGTTCTTTGTATAGATTGCCGAGTTCAGCTGGAATGCCCGCCCCTAGTGGGTATCAAGAGAGCGGACATTATAGTTTATCGGGTTCATCTGGCTACCAGAATCAGCATCATCCCCCTACTGGTGCTTCGCCTGTGCCTAGGGTTCCACCTGGTTCAATGTATCCCAATGTGCCCCCTTACTACTGA 1383 0.5879 MAMDPTKKRKLDENGFGDADSEHLNLSPSEARKMMERFTHDQLLDILQDAAVRHPDVLNSVRIVADPDVSQRKLFIRGLGWDTTTDGLRSLFSAFGLLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADIALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGKQGKRGGPGPVGPDGVQGHGNAHHGHGDGMGLAPSAGSGPGSLSGQYGGPVGLGSYGGFPGGLQGQPPMGNHPLNSSVGGLSSMGNQAPSAMGSAGGYGAGLGGHYGGYGGPGSTGFGGLGGGGGGGLGGGSGGVGAGVGGGAGGLGGSGGALGGAGSLYRLPSSAGMPAPSGYQESGHYSLSGSSGYQNQHHPPTGASPVPRVPPGSMYPNVPPYY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3916g00005 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 141 IPR000504 GO:0003723
Gabi3916g00005 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 232 IPR000504 GO:0003723
Gabi3916g00005 460 SUPERFAMILY RNA-binding domain, RBD 60 148 IPR035979 GO:0003676
Gabi3916g00005 460 Gene3D - 58 155 IPR012677 -
Gabi3916g00005 460 SUPERFAMILY RNA-binding domain, RBD 154 270 IPR035979 GO:0003676
Gabi3916g00005 460 Gene3D - 156 275 IPR012677 -
Gabi3916g00005 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Gabi3916g00005 460 MobiDBLite consensus disorder prediction 412 460 - -
Gabi3916g00005 460 MobiDBLite consensus disorder prediction 312 328 - -
Gabi3916g00005 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 245 IPR000504 GO:0003723
Gabi3916g00005 460 MobiDBLite consensus disorder prediction 419 439 - -
Gabi3916g00005 460 MobiDBLite consensus disorder prediction 441 460 - -
Gabi3916g00005 460 MobiDBLite consensus disorder prediction 240 328 - -
Gabi3916g00005 460 MobiDBLite consensus disorder prediction 1 25 - -
Gabi3916g00005 460 FunFam UBP1-associated protein 2C isoform A 55 158 - -
Gabi3916g00005 460 PANTHER GEO13361P1-RELATED 52 357 - -
Gabi3916g00005 460 SMART rrm1_1 73 145 IPR000504 GO:0003723
Gabi3916g00005 460 SMART rrm1_1 165 237 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3916g00005 Gabi-Chr3916 53093 60616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3916g00005 160 257 C2H2 Transcription Factor Family AT2G19380 40.000 2.53e-11 63.9