Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3912g00004 ATGTCGCTCAACATGAAAACCCTAACCCAAGCATTTGCGAAGACCGCCGCGGTGATTGAGAAGACTGTCCAGACGACGGTGCAGGAGGTGACAGGCCCGAAGCCACTTCACGACTACGAGATCCTCGATCAGATCGGGTCAGCAGGGCCCGGCCTCGCCTGGAGGCTGTACTCGGGCCGGGCCCGTGATCCGTCGCGGCAGCACCAGTATCCTGTTGTGTGTGTGTGGGTATTGGACAAGCGGGCCCTCTCGGAGGCGCGAATGCGTGCCGGGCTCACCAAAGCCGCGGAGGATTCGTTTTTGGATTTGATTCGAACGGATGCGAGTAAGCTCGTGCGGCTGAGACACCCTGGCGTGGTTCATGTGGTGCAGGCGTTGGATGAGAGCAAGAATGCAATGGCTATGGTTACCGAACCCTTGTTTGCTTCCGTTGCTAATACTCTTGGCAATCTTGATAATGTTCCTAATGTTCCTAAAGACCTTAGGGGAATGGAAATGGGACTGTTGGAGGTGAAGCATGGTTTACTTCAGATGGCAGAATCGCTGGACTTTCTTCACAACCATGCTCATCTTATTCATCGAGCTATATCACCTGAGAATATTCTTATCACTTTGAGTGGAGCCTGGAAACTTGCTGGATTTGGTTTTGCTATTTCTGCTTCTCAGATCTCTGGTGACTCATCTAACGTTCAAGCTTTCCATTATGCTGAATATGATGTTGAGGACTCTGTTTTGCCGCTTCAGCCATCACTTAATTACACTGCTCCTGAGCTGGTGAGGAGCTCTATGTCTTCAGCTGGGTGCTCTTCTGATATTTTCAGTTTTGGATGCCTTGCCCACCATTTAATTGCTCGCAAGCCTTTGTTTGACTGCCACAACAATTTGAAGATGTACACAAATACCTTGACTTACTTATCCAGTGATGCTTTCTCATCGATCCCATCGGAACTGGTTCCTGACTTGCAAAGGATGCTCTCTCCAAATGAGTCTTCCAGGCCAACAGCGATGGATTTTACAGGCTCACCATTTTTTCGGAATGACACTAGGTTGCGTGCTTTGCGCTTTCTTGATCACATGCTTGAAAGAGATAACATGCAGAAGTCAGACTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGATACAAGGTCCTTCCCCCACTTTGTGCAGAACTTAGAAATGTGGTGATACAACCAATTATTCTACCAATGGTTCTAACCATTGCGGAGTCTCAGGACAAGAATGATTTTGAGCAATCAACACTGCCAGCCCTTGTCCCTGTCTTGAGTACTGCTGCTGGTGAGACACTGTTACTACTTGTGAAGCACGCTGAGCTTATAATAAACAAGACTAGTCAACAGCATTTAGTTTCACATGTTCTTCCAATGATTGTTCGGGCCTATGATGATAATGATTCTCGTTTGCAAGAAGAGGTCCTTAAAAAATCTGTTTCCCTTGCGAAGCAACTTGATGCCCAGCTGGTGAAACAAGTGATTTTACCCCGTGTTCATGGATTAGCACTTAAAACAACAATTGCTGCGGTTAGAGTGAATGCTTTGTTGTGCCTAGGAGAAATGGTTAGCCGACTTGATAAACATGCTGTCCTGGACATCTTGCAAACTATTCAGCGCTGTACTGCTGTTGACCGTTCTCCTCCAACACTTATGTGTACCCTTGGGGTTGCAAATTCTATTTTTAAGCAGTATGGAGTAGAATTTGTTGCTGAGCATGTTCTTCCATTGCTTATGCCCCTCCTGACTGCTCAACAACTGAACGTTCAGCAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCGGAAGATAGAAGAGAAGCGTGGTGTGGCTGTGACTGATTCTGGAATCCCAGAGGTAAAACTATCTCCTGCGGTTAATGGTCTTCGAACTGAAGCCCTGAGGACAAGCAGCAACATGGTTTCTACTTCAAACAAAAGCAGCTCCACTTGGGATGAAGATTGGGTTCCCCAAACAAAGGGAACTGCCTCTTCTGTCCAGAATTCTATTGATACATCCAGTCAATCTGTGGCAGGCAATCCTGTGGGGCAAGTAACATCTTTACAAAAGCATTTACCTTTATCTGCTGCATCTAATCAGCAGACAACCATGTCATGTCCCTCAGTAGATGTAGAGTGGCCACCTCGAGCACCTTTTGGTGTTACCCCACAATTTGGTGATACTGAAAGGCCTACAATAGCAGCAGAAACGTCATCCACATCCAATCTTGAAGATGATGATCCTTTTGCTGATTGGCCTCCACGTCCTAGTGGCTCATTATCTAGTGGATCTGGAATTTCCAACAATGGTACTTTAGGAATGCCCTTAAACAAAGTTGGGTTTAATTCAATGGCAAGCACTTCAAGCAATATGGGTCTCCAAACAAGCAACAATTGGTCTGTTAGTTCCCAAAGTTCTGCAGAGTCCGTCAGTTTGAACTTCAGGAATGCTAGTTCAACCATCGGTAGTCTGAATAGTGGCCTTGAACCTCAGAATTCTCTTGGGTTCCTAAAACAAAATAATGAGTTTCCAGCATCGAACGTTTCGTATAATAATAACATCAAGTCCACAGATCTTGGATCAATATTTTCTTCCAACAAGAATGAACAGATTGCACCAAAACTCGCACCGCCCCCTTCAACCACAGTAGGTAGAGGACGAGGAAGAGGGAGGGGAGCTGCTTCAACCACTCGGTCCTCTCATCCCAAGTCACGTGCTGAGCAGCCACCTCTTTTGGATTTGTTGGGGTAG 2787 0.46 MSLNMKTLTQAFAKTAAVIEKTVQTTVQEVTGPKPLHDYEILDQIGSAGPGLAWRLYSGRARDPSRQHQYPVVCVWVLDKRALSEARMRAGLTKAAEDSFLDLIRTDASKLVRLRHPGVVHVVQALDESKNAMAMVTEPLFASVANTLGNLDNVPNVPKDLRGMEMGLLEVKHGLLQMAESLDFLHNHAHLIHRAISPENILITLSGAWKLAGFGFAISASQISGDSSNVQAFHYAEYDVEDSVLPLQPSLNYTAPELVRSSMSSAGCSSDIFSFGCLAHHLIARKPLFDCHNNLKMYTNTLTYLSSDAFSSIPSELVPDLQRMLSPNESSRPTAMDFTGSPFFRNDTRLRALRFLDHMLERDNMQKSDFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPIILPMVLTIAESQDKNDFEQSTLPALVPVLSTAAGETLLLLVKHAELIINKTSQQHLVSHVLPMIVRAYDDNDSRLQEEVLKKSVSLAKQLDAQLVKQVILPRVHGLALKTTIAAVRVNALLCLGEMVSRLDKHAVLDILQTIQRCTAVDRSPPTLMCTLGVANSIFKQYGVEFVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDMLRKIEEKRGVAVTDSGIPEVKLSPAVNGLRTEALRTSSNMVSTSNKSSSTWDEDWVPQTKGTASSVQNSIDTSSQSVAGNPVGQVTSLQKHLPLSAASNQQTTMSCPSVDVEWPPRAPFGVTPQFGDTERPTIAAETSSTSNLEDDDPFADWPPRPSGSLSSGSGISNNGTLGMPLNKVGFNSMASTSSNMGLQTSNNWSVSSQSSAESVSLNFRNASSTIGSLNSGLEPQNSLGFLKQNNEFPASNVSYNNNIKSTDLGSIFSSNKNEQIAPKLAPPPSTTVGRGRGRGRGAASTTRSSHPKSRAEQPPLLDLLG 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3912g00004 928 Pfam Protein kinase domain 103 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3912g00004 928 MobiDBLite consensus disorder prediction 769 783 - -
Gabi3912g00004 928 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3912g00004 928 Gene3D Transferase(Phosphotransferase) domain 1 159 347 - -
Gabi3912g00004 928 MobiDBLite consensus disorder prediction 747 783 - -
Gabi3912g00004 928 CDD PK_SCY1_like 45 346 - -
Gabi3912g00004 928 SMART serkin_6 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3912g00004 928 MobiDBLite consensus disorder prediction 880 928 - -
Gabi3912g00004 928 Gene3D - 348 621 IPR011989 -
Gabi3912g00004 928 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Gabi3912g00004 928 SUPERFAMILY ARM repeat 345 607 IPR016024 -
Gabi3912g00004 928 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 38 919 - -
Gabi3912g00004 928 Gene3D Phosphorylase Kinase; domain 1 35 138 - -
Gabi3912g00004 928 MobiDBLite consensus disorder prediction 649 668 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3912g00004 170 302 MAP Kinase Gene Family AT1G10210 30.147 1.57e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Gabi3912g00004 Pkinase 3.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3912g00004 K17541 - gmx:100796211 1556.96