Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3908g00001 ATGAGACAACCAGGTGCATACTCAAGCTTACTTTGTGGAAGAACAGGGTCACACTCTTTGCCCTTGGCAAGGATCAAGAAAATAATGAAGATGTCTGGTGATGAAGTGAAGATGGTATCTGGTGAAGCTCCTATTATTTTCTCCAAGGCTTGTGAGCTGTTAATTGAGGAACTAGCAAGAAGGTCGTGGAACATTACCATCCAAGGCAAAAGGAGAACTATGCACAAAGAGGATGTGGCCTCTGCTGTTTTATCCACTGATCTATTTGACTTTTTGGTTGCTTTGGTTTCCAATTCTGGCTGTGACAACCTTGTTGCCACTACCACTACAGTTAATGACATGGAAGAGATGAAACACTCCTAG 363 0.427 MRQPGAYSSLLCGRTGSHSLPLARIKKIMKMSGDEVKMVSGEAPIIFSKACELLIEELARRSWNITIQGKRRTMHKEDVASAVLSTDLFDFLVALVSNSGCDNLVATTTTVNDMEEMKHS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3908g00001 120 Gene3D Histone, subunit A 11 97 IPR009072 GO:0046982
Gabi3908g00001 120 SUPERFAMILY Histone-fold 13 92 IPR009072 GO:0046982
Gabi3908g00001 120 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 99 - -
Gabi3908g00001 120 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 83 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3908g00001 Gabi-Chr3908 14214 14576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3908g00001 17 97 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.494 1.14e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gabi3908g00001 CBFD_NFYB_HMF 9.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3908g00001 - - ccaj:109817175 165.622