Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3906g00002 ATGGAGGGAGGTGATGATCTCCACCAACACCAGCATCACCACCAACGGCAAAACTTCCCATTCCAACTCCTAGAGAAAAAAGAAGACCAAGAAGCTGCTTCTTGCTCCACCTCATCACCATACCCATCCCTAGCAATCTCAGCCGAACCCACAACATCCAACAACAACCAATTAGTCCTTGCATCCACCGAACCCTCCAACAAAAAACCGCTGCCAAAGAGAACCTCCACCAAAGACCGCCACACCAAGGTCGACGGCCGCGGCCGCCGCATTCGAATGCCTGCTCTCTGCGCCGCCAGAGTCTTCCAGCTCACCCGCGAACTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTCCTTCAACAGGCCGAACCCGCTGTCTTCGCCGCCACAGGCACCGGCACAATCCCCGCTAACTTCACATCCCTTAACATATCTCTCAGAAGCTCCGGCTCCACCATGTCCGTCCCATCTCAGCTACGATCCTCTTACTTCAACCCAAATTTCTCCCTCCAACAACGCAGAACCTTGTTCCCTGGAATCACCTTCTCCTCTGAGAACACCACCAACACTTCAACCACTCTTCTCAATTTTCAACAATCCAATAATAACCTAATAACCACCGGCAATATCTCGGAGAACACAGAAGAAGAAGAAGAAGCTCTGGGAAGAAAACAGCGACCCTCCGAGCAAGACTTGTCGTCGACACAGAATCAATTTGGGAGCTATTTGTTGCAGTCGAGTAGTTCAGGGAATATTCCGGCGAGTAATACTCAGATTCCACCGAATATATGGATGCTAGCGAATTCGAGTAACCAAGGTACTGTGAGTGGTGACCCTACTGTGTGGACATTCCCAGGGGTGAATAACAGTGCTTTGTATAGAGGAACCATGTCAAGTGGGTTGCATTTCATGAACTTTCCAACCCCAATGGCGTTGTTGCCTGGTCAGCAATTAGGGTCTTTTGGTGGTGGCAGTAGCGGTAATATAAATGAAGGACATTTGAGTATGCTTGCGGGCTTTAACCCTTATCGGCCGGTGATCGGCGTTTCAGAGTCTCAGGCAAGTGGGTCACAATCACAGCACGGTGGCGGCGGTGAGGACCAGCATGATAACACTAGTCACACTCACCACTCATAG 1143 0.5101 MEGGDDLHQHQHHHQRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPTTSNNNQLVLASTEPSNKKPLPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVFAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSYFNPNFSLQQRRTLFPGITFSSENTTNTSTTLLNFQQSNNNLITTGNISENTEEEEEALGRKQRPSEQDLSSTQNQFGSYLLQSSSSGNIPASNTQIPPNIWMLANSSNQGTVSGDPTVWTFPGVNNSALYRGTMSSGLHFMNFPTPMALLPGQQLGSFGGGSSGNINEGHLSMLAGFNPYRPVIGVSESQASGSQSQHGGGGEDQHDNTSHTHHS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3906g00002 380 MobiDBLite consensus disorder prediction 33 70 - -
Gabi3906g00002 380 MobiDBLite consensus disorder prediction 353 368 - -
Gabi3906g00002 380 MobiDBLite consensus disorder prediction 1 32 - -
Gabi3906g00002 380 MobiDBLite consensus disorder prediction 214 237 - -
Gabi3906g00002 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 371 IPR005333 GO:0003700
Gabi3906g00002 380 MobiDBLite consensus disorder prediction 353 380 - -
Gabi3906g00002 380 MobiDBLite consensus disorder prediction 71 88 - -
Gabi3906g00002 380 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Gabi3906g00002 380 MobiDBLite consensus disorder prediction 1 88 - -
Gabi3906g00002 380 Pfam TCP family transcription factor 75 231 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3906g00002 Gabi-Chr3906 56764 57906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3906g00002 68 372 TCP Transcription Factor Family AT3G47620 46.617 5.92e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gabi3906g00002 TCP 3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3906g00002 - - gmx:100790785 463.381