Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3905g00002 ATGGCCGAATCTCTCCTCTTCAGTGTCGCAGAATCACTCATTGGGAAGCTTGCTTCTCGTGCTGTTGAAGAAGCTTCTCGGGTGTTCGGTGCATACGACGATCTGCGAGAGCTCAAAGAAACTGTGTCATTAATCAAAGCTGTGCTGTTGGATGCAGAGCAAAAGCAGCGGCAGAACAACAACGAGTTGTGTGTGTGGCTGAGACAAATTAAGCGTGTTTTCTCTGATGCCGAAGACATAATTGATGATTTTGAATGTGAAGCGTTACGTAAGCATGTGGTCAACACTTACGGTAGCTGCACAAGGAAGGTACGCCGGTTCTTCTCAACATGTAATCCTCTTGTTTATCGTCTTAGAATGGCACATCAGATTAAAGATGTTAAAAAGAGGTTAGACAAAGTTGCTGCTGATAGGAATAAGCTTGGCCTTCAAACCATTGAGAATGATACACGTGTTGTGCATAGGAGGGAAATGACTCATTCCCATGTTGCTGCTTCCCATGTGATAGGAAGGGAACATGATAAAGAAAATATTATAAAGCTTTTGTTGCAAGATGGTACTGAAGATAGAAGTCTTTCTGTTATTCCCATTGTGGGAATTGGTGGCTTGGGAAAGACTACACTTGCACAATCAGTGTTCAATGATAAGAGTATAGATGAGTCTTTTCCATTGAAGATGTGGGTATGTGTCTCTGAAAATTTTGAACTTGAGGATATGCTTCGTAAAATCCTCAAGTCTGCTACGGATAATAGTACTTCTGCTCCTACCCTTACTCACCAAGAGAGCTTTAAAAGCTATGATATGGATCAACTCCAACGTCATCTAAGAAATAAACTTGCTGGTAAAAAGTTCTTGCTTGTCTTGGATGACGTATGGAACGAGGATCGTGTTGAATGGATTAAGTTGAAGAATTTACTAGAAGGAGGTGCTGAAGGAAGTAAAATCTTGGTAACTACACGTAGCCACTCAATTGCTACCATGATGGGCACTAATTCATTTTATCGTTTACAAGGTCTTTCTCCAGAAGACTCGTTATCTCTATTTGTCAAATGGGCTTTCAAAGAAGAAGGAGAAGAGAGAAGATATCCTGAATTGTTGCAGATTGGGAAAGAAATTGTGAAAAAATGCGGTGGGCTTCCGTTGGCATTGAGAACATTAGGGAGTTCATTATTCTTAAAGGTTGATAAACAAGAGTGGGAGTGTGTTAGAGACAATGACATTTGGAATTTACCTCAAAAACAAGGTGACATCCTGCCTGCTATAAAATTAAGTTATGATCAACTGCCTTCATATTTAAAACCATGTTTTGCTTGCTTCTCCTTTTCCCCGAAGGACTTTGCTTTCAATAATTTAATTGTTACACGGCTTTGGCTGGCACTTGGGTTTCTTCCATCACCAAACAAAAACAAAACATCGGAAGATGTTTGCATTGAACTTTTGTGTGAGCTACAATCAAGATCTTTTCTTCAAGATTTTAGTGACTATGGTACTGCTTGCAGTTTTAAATTACACGATTTGGTGCATGATCTTGCGATGTATGTTGCAAAGGATGAGTTCCAACTCATAAATTCAAGCAGTCCGGATATATCTGAGAATGTCCGGCATATGATATTCATAAAAAATGATTTGCTTGGTCAAACTTCAATTCCAAGAGGTCTGAGATGCATAATTTTTCCTGAGGGAGCCAACAATGAAGCTTTCTTGAATACGTTGGTGTCCAGGTGCAAATACTTGCGGTTATTGGAAATATGTAAGTCTAAATATGAGAGTTTGCCCAGCTCCATTGGTAAGTTGAAACATTTAAGATCTCTTTCTCTTGAAAACAATGATAAACTTGTGAGGCTCCCTAGTTCAGTGTGCGAGCTCCAACATCTGCAAGCTTTGTCCCTCGGAGGATGCACAAAGTTACAAACATTGCCCAAAGGAATAGGAAAAATGATCAGCCTTCGACTTCTGGGTTTAAGCACAAAGCAGTCTGATTTTCCAGACAAAGACATTGCCAAATTGACTTCTCTAGAAATATTAGTATTGAGTCATTGTCACAATTTGGAGTCATTGTTCGAAGGGGTGCAACTTCCTAAGCTTAAATGGTTAACTATTTATTTCTGTGGGAGTCTAAAGTCTTTGCCACTTCATGCTACTCCAAATCTTGAGACTTTAGTTATTGAGAAGTGCAATAAGTTGGAACTGTCGAAGGGCCCTGACAGCCAAATCCTTGAGTTGAAGTTAAAGCTTGTAAGTCTTGATAATTTGCCACAACTGGTGACTTTGCCACAATGGCTGCGAAGATCTGCCAGCACGTTACGTTCCTTACAGATTGAGGACTGTGACAATCTAAAGGAGCTTCCCGAGTGGCTATCGACTCTGATTTTTCTGAAAAGACTTTTCATATACAAATGTCCAGAGTTGCTTTCACTCCCTGATGACATGCATGGTTTCATCAACCTTGAAGAATTAGATATTCAAGATTGTCCGGAATTATGCAGAAGATACCGGCCAGAAGTCGGACGTGATTGGCCCAAAATATCACACATCAAAAATGTCTTAATTGGTGAACTATCATCAGCGGAAGAGGAATTTTGA 2583 0.3995 MAESLLFSVAESLIGKLASRAVEEASRVFGAYDDLRELKETVSLIKAVLLDAEQKQRQNNNELCVWLRQIKRVFSDAEDIIDDFECEALRKHVVNTYGSCTRKVRRFFSTCNPLVYRLRMAHQIKDVKKRLDKVAADRNKLGLQTIENDTRVVHRREMTHSHVAASHVIGREHDKENIIKLLLQDGTEDRSLSVIPIVGIGGLGKTTLAQSVFNDKSIDESFPLKMWVCVSENFELEDMLRKILKSATDNSTSAPTLTHQESFKSYDMDQLQRHLRNKLAGKKFLLVLDDVWNEDRVEWIKLKNLLEGGAEGSKILVTTRSHSIATMMGTNSFYRLQGLSPEDSLSLFVKWAFKEEGEERRYPELLQIGKEIVKKCGGLPLALRTLGSSLFLKVDKQEWECVRDNDIWNLPQKQGDILPAIKLSYDQLPSYLKPCFACFSFSPKDFAFNNLIVTRLWLALGFLPSPNKNKTSEDVCIELLCELQSRSFLQDFSDYGTACSFKLHDLVHDLAMYVAKDEFQLINSSSPDISENVRHMIFIKNDLLGQTSIPRGLRCIIFPEGANNEAFLNTLVSRCKYLRLLEICKSKYESLPSSIGKLKHLRSLSLENNDKLVRLPSSVCELQHLQALSLGGCTKLQTLPKGIGKMISLRLLGLSTKQSDFPDKDIAKLTSLEILVLSHCHNLESLFEGVQLPKLKWLTIYFCGSLKSLPLHATPNLETLVIEKCNKLELSKGPDSQILELKLKLVSLDNLPQLVTLPQWLRRSASTLRSLQIEDCDNLKELPEWLSTLIFLKRLFIYKCPELLSLPDDMHGFINLEELDIQDCPELCRRYRPEVGRDWPKISHIKNVLIGELSSAEEEF 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3905g00002 860 Gene3D - 149 333 IPR027417 -
Gabi3905g00002 860 Gene3D - 10 125 - -
Gabi3905g00002 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 438 IPR027417 -
Gabi3905g00002 860 PRINTS Disease resistance protein signature 376 390 - -
Gabi3905g00002 860 PRINTS Disease resistance protein signature 278 292 - -
Gabi3905g00002 860 PRINTS Disease resistance protein signature 194 209 - -
Gabi3905g00002 860 PRINTS Disease resistance protein signature 667 683 - -
Gabi3905g00002 860 SUPERFAMILY L domain-like 493 842 - -
Gabi3905g00002 860 PANTHER DISEASE RESISTANCE PROTEIN RP 35 824 IPR044974 GO:0006952
Gabi3905g00002 860 Gene3D Ribonuclease Inhibitor 551 852 IPR032675 -
Gabi3905g00002 860 Coils Coil 35 55 - -
Gabi3905g00002 860 Gene3D - 338 429 IPR042197 -
Gabi3905g00002 860 CDD RX-CC_like 8 135 IPR038005 -
Gabi3905g00002 860 Pfam Rx N-terminal domain 10 99 IPR041118 -
Gabi3905g00002 860 Pfam NB-ARC domain 172 425 IPR002182 GO:0043531
Gabi3905g00002 860 FunFam Probable disease resistance protein At1g61300 150 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3905g00002 Gabi-Chr3905 47937 50519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3905g00002 195 819 WRKY Transcription Factor Family AT5G45050 24.711 2.55e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3905g00002 - - gmx:100780033 1052.74