Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3904g00001 ATGTATTCCAAGTATGATTTTATTAAGGATCTTAATCCTTCTAAAGAGGAGTGGAGGATTAAGGCTAGAGTTGTTAGAACATGGAAGGTTCCTAATTTTCAGCAAAAAAATTTGGACGACAACGTAGAGATGATTCTGTTAGATGAAAAGGGTGGAAGGGTCCACGCTGCTATAAAGGGTTCTTTAAATATCTGTAACAAAATTCACGAAGGAGAAGTTTATTTCATAAAAAAATTTGGAGTTGGTTTGAATAGTGGGAGTTTCAGGCCAACTAAGCATGATTATCTTTTGTCCTTCAACTTGAGGACTGATGTAAAATCCACTATTGATTCTGCTATTCCCACCAATGGATTTGATTTTGTAGATTTTGACGTTATAGAGAAAGAGTCTTCTGATTCCCCTTATTTAGTAGATGTCATCGGTTTAGTTTCTGGAATAGGGGAAGTTCGTGAGCATATTATCTCCGGTAGGAAGACAAAAATGGTTGTCGTGGAGCTTGATAACCTCAGGCTTTCGTCAGATGTCATTGATAGCGGTTACACGTTGTCTCAGTTATCAAGTCAGTCCTCGTATTCTTTTGAGAATGATTTCCTGAAAGAGACGGAAAGGAAGTGTATCAGTGATGTTAAGAATTGCAGTGAGGTTACTACTTGCATTACTTATGGAACCATAAAATCGATTGAGAGCAAATATAAATGGTGGTACAAGTCCTGTAATAAATGTCCATATTCTGTTTATGAAGATTTCGAGAAATGGTATTGTAAAAACTGCCAAAAACTTGATGATTATTATCCAAAATTTTGTGTGCAGTTGAGAGTTGTGGATCACACTGATTCTGCATCTTTCATTCTGTTTGATAGAGACTGTGTTGCTTTGTTGGGCATGAGTGCTGCGGATTTACGTGAGCAGCATTTCAAAAGGGGTGATGATTTTGAGCACTATCGTAAGGAACTTAATGTTCTTATTGATAAATCCATGTTGTTTAAAGACGAAGGATTATTTGAGAAGGCTTGCGACAGTGTCGTTGCATCAGCAGAACCGAAAAGAGCTACGGATGTGAAAAGTCAGACGTGTGATAGTGCAGACGTTGGTGATATTTCGCTATCAATGGTGACGCCGTTAATGAATCCTAATGATCCCCTTCAAGACGATTTTAATTCATCAGTTAATAGATTGGTGATGGATGAATTGTTGCATGACAGTTTCTCTTTGAAAGAAGAGCATGACAGGCTACTGAATTCACTCACTAATGAGCAGAGGGTTGTTTATGACAAAATAATTTCAGCTATTTCGGCAGGTAAAGGAGGATTTTTTTTCCTGTACGGCTTTGGTGGGACTGGAAAAACATTTATTTGGAACACCCTGTCAGCATTTGTTCGATCTCGAGCTGAAATAGTGCGTAATGTTGCTTCTAGCGGAATTGCTTCACTTCTTCTTCCTGGAGGACGTACGGCACATTCTAGATTTCGTATTCCTATACAGATCACCGAAGATTCAACATGTAATATAAAAGAAAATTCTACTTTGGCAGAGTTGTTGTAA 1542 0.3794 MYSKYDFIKDLNPSKEEWRIKARVVRTWKVPNFQQKNLDDNVEMILLDEKGGRVHAAIKGSLNICNKIHEGEVYFIKKFGVGLNSGSFRPTKHDYLLSFNLRTDVKSTIDSAIPTNGFDFVDFDVIEKESSDSPYLVDVIGLVSGIGEVREHIISGRKTKMVVVELDNLRLSSDVIDSGYTLSQLSSQSSYSFENDFLKETERKCISDVKNCSEVTTCITYGTIKSIESKYKWWYKSCNKCPYSVYEDFEKWYCKNCQKLDDYYPKFCVQLRVVDHTDSASFILFDRDCVALLGMSAADLREQHFKRGDDFEHYRKELNVLIDKSMLFKDEGLFEKACDSVVASAEPKRATDVKSQTCDSADVGDISLSMVTPLMNPNDPLQDDFNSSVNRLVMDELLHDSFSLKEEHDRLLNSLTNEQRVVYDKIISAISAGKGGFFFLYGFGGTGKTFIWNTLSAFVRSRAEIVRNVASSGIASLLLPGGRTAHSRFRIPIQITEDSTCNIKENSTLAELL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3904g00001 513 Gene3D - 112 181 IPR012340 -
Gabi3904g00001 513 Pfam PIF1-like helicase 415 513 IPR010285 GO:0000723|GO:0003678|GO:0006281
Gabi3904g00001 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 498 IPR027417 -
Gabi3904g00001 513 SUPERFAMILY Nucleic acid-binding proteins 201 318 IPR012340 -
Gabi3904g00001 513 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Gabi3904g00001 513 Pfam Domain of unknown function DUF223 43 133 IPR003871 -
Gabi3904g00001 513 Gene3D - 7 110 IPR012340 -
Gabi3904g00001 513 Gene3D - 411 512 IPR027417 -
Gabi3904g00001 513 CDD RPA1_DBD_C 218 329 IPR047192 -
Gabi3904g00001 513 Gene3D - 187 339 IPR012340 -
Gabi3904g00001 513 Pfam Replication factor-A C terminal domain 220 318 IPR013955 -
Gabi3904g00001 513 CDD RPA1_DBD_A_like 19 105 - -
Gabi3904g00001 513 PANTHER UNCHARACTERIZED 373 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3904g00001 Gabi-Chr3904 54752 58656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3904g00001 11 146 Core DNA Replication Machinery Family AT5G08020 28.276 2.94e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3904g00001 - - soe:110780760 186.808