Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00057 ATGATTCTGTTAGATGAAAAGGGTGGAAGGGTCCACGCTACTATCAAGGGTTCTTTAAATATCCGTAACAAAATTCACGAAGGAGAAGTTTATTTCATAAAAAATTTTGGAGTTGGTTTGAATAGTGGGAGTTTCAGGCCAACTAAGCATGATTATCGTTTGTCCTTCAACTTGAGGACTGATGTAAAATCCACTATTGATTCTGTTATTCCCACCAATGGATTTGATTTTGTAGATTTTGACGTTATAGAGAAAGAGTCTTCTGATTCCCTTTATTTAGTAGATGTCATCGGTTTAGTTTCTGGAATAGGGGAAGTTCGTGAGCATATTATCTCCGGTAGGAAGACAAAAATGGTTGTCGTGGAGCTTGATAACCTCAGGGGTCACAAGCTCGAGTGCACTCTCTGGGAGGACTACGTGGACCAGGTGCAACAAATTTTGGCGAGTAACCAATCTCCTCCAAACATGATGATAGTTCAGCTTGCTAGAATAAAGGGTTTCAGGGGTGAGTTCACATAA 519 0.4008 MILLDEKGGRVHATIKGSLNIRNKIHEGEVYFIKNFGVGLNSGSFRPTKHDYRLSFNLRTDVKSTIDSVIPTNGFDFVDFDVIEKESSDSLYLVDVIGLVSGIGEVREHIISGRKTKMVVVELDNLRGHKLECTLWEDYVDQVQQILASNQSPPNMMIVQLARIKGFRGEFT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00057 172 Gene3D - 69 172 IPR012340 -
Gabi3898g00057 172 SUPERFAMILY Nucleic acid-binding proteins 75 169 IPR012340 -
Gabi3898g00057 172 Pfam Domain of unknown function DUF223 1 90 IPR003871 -
Gabi3898g00057 172 CDD RPA1_DBD_A_like 1 62 - -
Gabi3898g00057 172 CDD RPA1_DBD_B_like 95 170 - -
Gabi3898g00057 172 SUPERFAMILY Nucleic acid-binding proteins 1 67 IPR012340 -
Gabi3898g00057 172 Gene3D - 1 67 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00057 Gabi-Chr3898 601888 602662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00057 3 170 Core DNA Replication Machinery Family AT4G19130 28.261 7.66e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00057 - - tpra:123908197 134.42