Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00042 ATGGTATCTGTCGAAACAAAAGATATGGAACGGAAGCGGAATAGGAAACGGCCTCGTCTCGCGTGGGATGTACCTCCTCCACCACTGCCAGAGGCGCAAAGGGCTCTGGTGGTGGCTGGTGAAGAAGGAATCGAAAAAAGGCATGCCTCGCCTCCAAAAAGGGATGACGATCGCGAAGGACATTATGTCTTCAATCTTGGCGAAAATCTCACACCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGTTGGGACCGCCAAACCAGAGAATACGTGGCTATCAAAGTAATTAGAAGCATACGGAAATATCGTGATGCAGCGATGCTTGAGGTTGATGTGCTTCAAAATCTAGCACAGAATGATAGAGGAAGCTCAGGCTGTGTGCAGATCCGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCTTAATCCACACTGATCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAATATGTAAAGCTCCCTAGCTGTAAGAGGGTTTCCTCAGATGAAACGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATCACAACCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATTATCCTAGGTCTAGGGTGGTCATACCCATGCGATTTGTGGAGTGTTGGATGTATTCTCGTCGAACTATGCTCGGGTGGAGCATTGTTTCAGACTCATGAAAATTTGGAGCACCTAGCAATGATGGAGAGAGTTCTTGGACCTCTTCCCGAGCACATGGTTCGAAGGTCCAACCGAGGAGCAGAAAAATATTTCAGGAATGGATCGCGACTAAATTGGCCCGAGGGAGCTGTTTCAAGGGAGAGCATTCATGCAGTGAAGAAGCTTGCTCAACTTAAGGATATTGTATCACGTCATGTGGATTCGTCTAGGTCCTCTTTTACTGATTTGTTACATGGCTTATTGACGTATGATACGACTAAACGTCTAACGGCTCGTCAAGCCCTTGATCATCCCTTCTTTAGAAATCCAACTTAA 1212 0.4422 MVSVETKDMERKRNRKRPRLAWDVPPPPLPEAQRALVVAGEEGIEKRHASPPKRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVIRSIRKYRDAAMLEVDVLQNLAQNDRGSSGCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSCKRVSSDETQFRCLPKSSAIKLIDFGSTAFDNHNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILVELCSGGALFQTHENLEHLAMMERVLGPLPEHMVRRSNRGAEKYFRNGSRLNWPEGAVSRESIHAVKKLAQLKDIVSRHVDSSRSSFTDLLHGLLTYDTTKRLTARQALDHPFFRNPT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00042 403 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3898g00042 403 Gene3D Transferase(Phosphotransferase) domain 1 128 399 - -
Gabi3898g00042 403 Pfam Protein kinase domain 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00042 403 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 34 401 - -
Gabi3898g00042 403 ProSiteProfiles Protein kinase domain profile. 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00042 403 MobiDBLite consensus disorder prediction 40 59 - -
Gabi3898g00042 403 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
Gabi3898g00042 403 FunFam Serine/threonine-protein kinase AFC2 150 399 - -
Gabi3898g00042 403 SMART serkin_6 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00042 403 SUPERFAMILY Protein kinase-like (PK-like) 61 401 IPR011009 -
Gabi3898g00042 403 MobiDBLite consensus disorder prediction 1 29 - -
Gabi3898g00042 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gabi3898g00042 403 FunFam Serine/threonine-protein kinase AFC2 61 154 - -
Gabi3898g00042 403 CDD PKc_CLK 61 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00042 Gabi-Chr3898 340211 344339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00042 73 401 Core Cell Cycle Gene Families AT3G48750 28.319 6.54e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gabi3898g00042 Pkinase 8.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00042 K08287 - gmx:100782453 739.954