Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00041 ATGGTATCTGTCGAAACAAAAGATATGGAACGGAAGCGGAATAGGAAACGGCCTCGTCTCGCGTGGGATGTACCTCCTCCACCACTGCCAGAGGCGCAAAGGGCTCTGGTGGTGGCTGGTGAAGAAGGAATCGAAAAAAGGCATGCCTCGCCTCCAAAAAGGGATGACGATCGCGAAGGACATTATGTCTTCAATCTTGGCGAAAATCTCACACCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGTTGGGACCGCCAAACCAGAGAATACGTGGCTATCAAAGTAATTAGAAGCATACGGAAATATCGTGATGCAGCGATGCTTGAGGTTGATGTGCTTCAAAATCTAGCACAGAATGATAGAGGAAGCTCAGGCTGTGTGCAGATCCGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATGTCTAGGGTGGTCATACCCATGCGATTTGTGGAGTGTTGGATGTATTCTCGTCGAACTATGCTCGGGTGGAGCATTGTTTCAGACTCATGAAAATTTGGAGCACCTAGCAATGATGGAGAGAGTTCTTGGACCTCTTCCCGAGCACATGGTTCGAAGGTCCAACCGAGGAGCAGAAAAATATTTCAGGAATGGATCGCGACTAAATTGGCCCGAGGGAGCTGTTTCAAGGGAGAGCATTCATGCAGTGAAGAAGCTTGCTCAACTTAAGGATATTGTATCACGTCATGTGGATTCGTCTAGGTCCTCTTTTACTGATTTGTTACATGGCTTATTGACGTATGATACGACTAAACGTCTAACGGCTCGTCAAGCCCTTGATCATCCCTTCTTTAGAAATCCAACTTAA 972 0.4527 MVSVETKDMERKRNRKRPRLAWDVPPPPLPEAQRALVVAGEEGIEKRHASPPKRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVIRSIRKYRDAAMLEVDVLQNLAQNDRGSSGCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVACLGWSYPCDLWSVGCILVELCSGGALFQTHENLEHLAMMERVLGPLPEHMVRRSNRGAEKYFRNGSRLNWPEGAVSRESIHAVKKLAQLKDIVSRHVDSSRSSFTDLLHGLLTYDTTKRLTARQALDHPFFRNPT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00041 323 Pfam Protein kinase domain 193 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00041 323 Pfam Protein kinase domain 74 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00041 323 Gene3D Transferase(Phosphotransferase) domain 1 188 319 - -
Gabi3898g00041 323 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 34 188 - -
Gabi3898g00041 323 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3898g00041 323 SUPERFAMILY Protein kinase-like (PK-like) 61 321 IPR011009 -
Gabi3898g00041 323 MobiDBLite consensus disorder prediction 1 29 - -
Gabi3898g00041 323 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
Gabi3898g00041 323 ProSiteProfiles Protein kinase domain profile. 74 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00041 323 SMART serkin_6 74 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00041 323 MobiDBLite consensus disorder prediction 40 59 - -
Gabi3898g00041 323 FunFam Serine/threonine-protein kinase AFC2 61 154 - -
Gabi3898g00041 323 Gene3D Transferase(Phosphotransferase) domain 1 128 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00041 Gabi-Chr3898 340211 344339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00041 185 322 EF-hand Containing Proteins AT5G22840 29.412 1.87e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gabi3898g00041 Pkinase 2.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00041 K08287 - gmx:100782453 345.125