Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00037 ATGGAAGGAACTCGTGGAAAGGAGGAAACCTTACCACCGGGTTTTCGATTTCATCCTACAGATGAAGAACTCATCACTTGCTATCTCATAAATAAGATATCGGATTCTAGTTTTACAGGCAAAGCAATAACTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGGAAGGCGAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTCAGAGATCGTAAATACCCCACTGGTGTGAGAACTAATCGAGCAACGAACACCGGGTACTGGAAGACCACAGGGAAAGACAAGGAGATCCTCAATAGTGTTACATCGGAGTTGGTAGGTATGAAAAAGACTTTGGTTTTCTACAAAGGAAGAGCTCCAAGAGGAGAGAAAAGTAACTGGGTCATGCATGAATACCGCATTCACTCAAAATCCAGCTTCAGAACTAGCAAGCAGGATGAATGGGTGGTTTGCAGGGTATTCCAGAAGAGTGCTGGAGCAAAAAAGTACCCTTCTTCCAACCATACAAGAGCAGTGAATCCTTATAGCTTGGAAATAGGTCCTAATATTGTGCCACCTCCAATGATGCAATTAGGAGATCATGCTGCTCATTTCCTTTATGGAAGGAATTACATGAGCAATGCAGAGGTAGCCGAAGTTGCTAGGGTTTTGAGAGGAGGTGGATCCACCAGTAATGTCAACCTACCAATGCTATCCCACTTGAACTACCCTGCATCTGCAGCAGGAGGAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGAGGAGGAGGAGGAGCAACATCACAACCCATTTTGCGGCCAATGCAACCTTTGTCACATCATGCTCAGACAATGGCTCATGTACATGATGTCAGTTCCAACATGATGACAGCTAGTTCTCTTGGTGCAGAGAATGTAGGTTATGTTACAGAAATGAGCAATGCAAATCCTCATGGTAATAGGTATATGGGCATGGACCATTGCATGGATCTAGATAATTACTGGCCTTCCTACTAA 1014 0.4408 MEGTRGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGKAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTSKQDEWVVCRVFQKSAGAKKYPSSNHTRAVNPYSLEIGPNIVPPPMMQLGDHAAHFLYGRNYMSNAEVAEVARVLRGGGSTSNVNLPMLSHLNYPASAAGGGFTISGLNLNLGGGGGGATSQPILRPMQPLSHHAQTMAHVHDVSSNMMTASSLGAENVGYVTEMSNANPHGNRYMGMDHCMDLDNYWPSY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00037 337 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 267 - -
Gabi3898g00037 337 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Gabi3898g00037 337 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Gabi3898g00037 337 FunFam NAC domain-containing protein 100-like 20 164 - -
Gabi3898g00037 337 SUPERFAMILY NAC domain 9 160 IPR036093 GO:0003677|GO:0006355
Gabi3898g00037 337 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00037 Gabi-Chr3898 314106 316336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00037 5 337 NAC Transcription Factor Family AT2G24430 52.661 4.00e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3898g00037 NAM 3.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00037 - - gmx:100804931 584.719