Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00020 ATGTCTCACAAAAGAGAACACTGTTGTCTTTTCATGTTGTTCATGTTGGCCACTTGTTTTTTGCCATCATTGGGTGACACAAACGCTCAAATTCTGCTCAACTTCAAAAGCTCCTTGTCCGATGCTGATGCTTTAAAGAACTGGAATGAGTCTATAAGTCTGTGTGGCTGGAATGGTATATTATGCTTCAATCAGACATTTCATGGATTGAGACTAGAGAATATGGGACTAAGTGGCTTGATTAATGTAGACACCCTGCTGGAATTGTCCAATTTCAACAGTTTTAGTGTCATTAACAATAGCTTTGAGGGTCCAATGCCTGCATTCAAGAAGCTTGTGAGTTTAAGGGCATTGTTTCTGAGCAATAACAAATTCTCTGGTGATATTTCTGATGATGCTTTTGATGGGATGGGACGCCTGGAGAGAGTATTATTGGCAGAAAATGGATTCACGGGTCATATTCCTACATCCCTTGCTAATTTGCCTAGGCTTTTGGATGTGGACTTGCATGGAAATAGATTTGAAGGCAACATACCAGAATTTCAACAGAGAGATTTCAGAGTGTTTAATTTATCGAACAATCAATTGGAGGGTTCAATACCCGAAAGCTTAAGCAACGAGGGTCCAATCTCATTTGCTGGTAACCAAGGTCTATGTGGAAAACCTCTAAACCAGGCCTGCAGTAGCATCCCCCCTTCCTCCACCTCTGATCAACAACATCCTCCACAGGAAGAAAAAGAACATAAGAAACACCGTGTTCGTATTGCTGCCATTGTAGTTGCGGTTGTTGTTGTTTTGGCTTTAATACTAGCAGTTCCATTTATCCGTTGGCGTCGAATTAGGCAAACAGCACAACCCCAGAACAATAGTGCAGTTTCTAGTGAAGTCAGATCCTCTGAGGTGACAGCTGAATCCAAGAAGAATGTAGATGGAGAGTTTATGTTTGTTAGGAACGAGAGAGAGGTGTTTGATTTGCAAGACTTGCTTAGGGCCTCAGTTGAGGTTCTTGGTACTGGCAGTTTTGGTTCCACGTGCAAGGTCATGGTTTTGAATGAACCAGTTATGGTCGTGAAGAGGTTTCAACATATGAACAATCTTGGGGAAAAAGAATTCTTTGAGCACATGAAAAGGCTTGGAAGGTTGACACATCCCAATCTACTCCCTCCTGTTGCTTTCTTTTACAGCAAAGAAGAGAAGCTTATGGTTCATGACTTTGTTGAAAATGGCAGCTTGGCTAGTCATCTCCATGGTACAAGTGGTTCTGAGTTGGACTGGTCAACACGTTTAAAGATCATAAAAGGAGTGGCTAGAGGGTTAGCTTATCTGTACAGAGAGTTCCCTGACCAAGACCTACCACATGGCCATCTTAAATCATCCAATGTTTTGTTGGACCATTTATTTGAGCCTCGTTTGACAGAGTATGGACTTGTGGCAGTGATGGAGAAGAGCCACGCTCAGCAGTTCATGGCAGCTTATAAGTCCCCAGAGGTGAACCAGTTTGACAGGCCCAGTGAGAAGAGTGATGTTTGGTGTTTGGGGATCCTAATACTGGAGGTTTTGACGGGGAAAATCCCAGCAAATTATCTAAGACATGGGAAGGGAGCAAGTGAAGATTTGGCAACATGGGTGAACTCAGTTGTGAGGGAAGGGTCGAGTGGGGAAGTGTTTGATAAGGACATTTTGTGGAGAAGGAATAGTGAGGGTGAGATGATGAAGCTGTTGAGGATTGGAATGGGTTGCTGTGAATGGAGTTTGGAGAGTAGGTGGGATTGGAGGGAGGCTGTGGCTAGGATTGAAGAGTTGAAGGAGAGGGATATTGTTGAACATGATATTGAAGAAGGCTATGATTTGTTCTATGAAGTTGATTTGTCTCACAGTCATTAG 1884 0.4294 MSHKREHCCLFMLFMLATCFLPSLGDTNAQILLNFKSSLSDADALKNWNESISLCGWNGILCFNQTFHGLRLENMGLSGLINVDTLLELSNFNSFSVINNSFEGPMPAFKKLVSLRALFLSNNKFSGDISDDAFDGMGRLERVLLAENGFTGHIPTSLANLPRLLDVDLHGNRFEGNIPEFQQRDFRVFNLSNNQLEGSIPESLSNEGPISFAGNQGLCGKPLNQACSSIPPSSTSDQQHPPQEEKEHKKHRVRIAAIVVAVVVVLALILAVPFIRWRRIRQTAQPQNNSAVSSEVRSSEVTAESKKNVDGEFMFVRNEREVFDLQDLLRASVEVLGTGSFGSTCKVMVLNEPVMVVKRFQHMNNLGEKEFFEHMKRLGRLTHPNLLPPVAFFYSKEEKLMVHDFVENGSLASHLHGTSGSELDWSTRLKIIKGVARGLAYLYREFPDQDLPHGHLKSSNVLLDHLFEPRLTEYGLVAVMEKSHAQQFMAAYKSPEVNQFDRPSEKSDVWCLGILILEVLTGKIPANYLRHGKGASEDLATWVNSVVREGSSGEVFDKDILWRRNSEGEMMKLLRIGMGCCEWSLESRWDWREAVARIEELKERDIVEHDIEEGYDLFYEVDLSHSH 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00020 627 Gene3D Phosphorylase Kinase; domain 1 294 405 - -
Gabi3898g00020 627 Pfam Leucine rich repeat N-terminal domain 29 62 IPR013210 -
Gabi3898g00020 627 Gene3D Transferase(Phosphotransferase) domain 1 406 617 - -
Gabi3898g00020 627 ProSiteProfiles Protein kinase domain profile. 330 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00020 627 SUPERFAMILY L domain-like 48 206 - -
Gabi3898g00020 627 Gene3D Ribonuclease Inhibitor 26 133 IPR032675 -
Gabi3898g00020 627 MobiDBLite consensus disorder prediction 223 249 - -
Gabi3898g00020 627 MobiDBLite consensus disorder prediction 223 239 - -
Gabi3898g00020 627 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Gabi3898g00020 627 Gene3D Ribonuclease Inhibitor 134 230 IPR032675 -
Gabi3898g00020 627 Pfam Protein kinase domain 333 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00020 627 SUPERFAMILY Protein kinase-like (PK-like) 333 602 IPR011009 -
Gabi3898g00020 627 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 603 IPR046959 -
Gabi3898g00020 627 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00020 Gabi-Chr3898 166671 169502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00020 1 605 Receptor kinase-like Gene Family AT4G31250 44.091 1.41e-179 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3898g00020 Pkinase 6.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00020 - - gmx:100803999 860.522