Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00012 ATGTGGTTGCCAAAGAATCATTCTGACAAGAAGGATGGTGTGAATGGAATAGTAGCAGTGGCAATAGATAAAGAAAAGGGGAGCCAATGTGCACTAAAATGGGCTGTTGACAATATCCTCACCAGAAATGCAACTGTAGTTCTCATCCATGTCAAGCTTCTCACACCTTCTCTTTCTTCATCACCTTCTCTTTTCAACCCAAGGGCAGGGTTATTTGGAAGTGGTGATCAGAGTTCACCTGTATGCAAAGAATCCGATGGCCAAAACAAAAACATTTTCCTCCCATATCGTGTCTTCTGTACACGGAAAGATATACAATGCGAGGACGTGCTACTAGAAGATGTAGATGTAGCCAAAGCTTTAACTGAATATGCTGCTCAGGCAGGAATTGAGCACCTGGTTCTTGGCTGTTCAACAAGAACTGGTTTGCTCAAATTCAAGGTATCAGATATTCCAGGAATAGTATCAAAAGGGGCACCAGATTTCTGCACAGTCTATGTGGTTTCTAAAGGAAAGATTCAATCAATGAGATCTGCTTCTCGTCCTGCTCCAGCCATTAGCCCTCTAAGCAACCAGGTCAGTCAAGCTAGTATCAAGTCAGACCAATCAGACTCAACTGAGCCATTGACTAATAGTGTGAAAGAACCTGCAAGGAGATCCATTGAGACACCACCACGTAAATCACTGGATGGAACAGAATCATTCAGGTCACCATTCACTAGGAAAGGTTACATTGGAAGGCCTTATGGTGAAACTTTAAAGACAGATACTGACATATCCTTTGTAAGCTCTGGAAGGTCAAGTACAGACCGCATGTCCAACCCTCGGTTTTCATATAGCTCAGACACAGATGCAAGCTACAGCTTTGAGTCAATGCATTATGGAAGGAAGTCTGCGGAAATCAGCACTCCTCCAGAATTCACATCTCTTTCATTTGAAAGTGATAGGAATTCATCTTGTACATCACAAGCCGTGGATGACATGGAGGCTGAAATGAGGAGATTGAAGTTGGAGCTCAAGCAAACAATGGAAATGTATAATACAGCCTGTAAAGAAGCACTCACAGCACAGCAGAAGGCAGTGGAACTTCAGCGATGGAAATTAGAGGAAGAGAGGAGATTGGAAGAGGCAAGGCTCGCTGAGGAAGCTGCATTGGCCGTTGCAGAAATGGAGAAAGCCAAATCTAGAGCAGCCATTGAGGCTGCTGAAGCACAAAAGAGGATTGCAGAACTGGAAGCACAGAAGAGACTTAATGCAGAAATGAAAGCACACAGAGAATCAGAAGAGAAAAAAAAAGTACTTGATGCTTTGGTAAATGTAGATGTCAGGTATAGAAGGTATTCAATCGAGGAGATTGAAGCTGCAACAAATTTTTTTTCAGAATCCTTGAAGATTGGAGAAGGAGGGTATGGTCCAGTTTTTAAGTGCCTTCTGGACCATACACCTGTTGCAGTAAAGGTTCTACGTCCTGATGCAGCACAAGGAAGGTCACAATTCCAACGAGAGGTTGAGGTACTAAGCTGCATAAGGCATCCAAACATGGTTCTGCTACTAGGAGCATGCCCAGAATATGGTTGCCTTGTATATGAGTACATGGCTAATGGAAGCTTGGATGATCGCCTATTTCGTAAAGGAAACACTCCCTCACTTCCTTGGCAGCTTAGGTTCAAAATTGCAGCTGAAATAGGCACTGGCCTGTTGTTCCTTCACCAGACAAAACCAGAACCACTGGTGCATAGGGACTTGAAACCAGCAAACATCTTGCTTGATGGCAACTACGTTGCCAAGATCAGTGATGTAGGCTTGGCAAGGCTAGTTCCACCTTCTGTGGCTGACACTGTTACACAATATCGCATGACATCCACTGCAGGAACATTCTGCTATATAGATCCTGAGTATCAGCAAACGGGAATGCTTGGTGTGAAATCAGATATATACTCACTTGGGATCATTTTCTTGCAAATGTTGACAGCAAGAACACCAATGGGATTGGCTCATCATGTTGAAAGTGCCATTGAGAAGGGAGATCTTACTGAGATGCTTGATCCAACAGTGCCTGATTGGCCACAAGAGGAGGTCTTGAATCTTGCAAAGATGGCAGTTCAGTGTGCTGAATTAAGGAGGAAAGATAGACCTGATCTTGCCAAGGTTGTCTTACCAGAACTCAACAGGCTAAGAGAACTTGCTGAAAATAGTAATATATTGGGTAACTCTATAAATCTGTCCCATAGTAGACATGTTTCTATGCAGCTGGATGGAAGCAATCCTACATTTTCTCACTCTGAGGAGATTAGAAGAAACACATCAGTCGGTGTCTGA 2319 0.4338 MWLPKNHSDKKDGVNGIVAVAIDKEKGSQCALKWAVDNILTRNATVVLIHVKLLTPSLSSSPSLFNPRAGLFGSGDQSSPVCKESDGQNKNIFLPYRVFCTRKDIQCEDVLLEDVDVAKALTEYAAQAGIEHLVLGCSTRTGLLKFKVSDIPGIVSKGAPDFCTVYVVSKGKIQSMRSASRPAPAISPLSNQVSQASIKSDQSDSTEPLTNSVKEPARRSIETPPRKSLDGTESFRSPFTRKGYIGRPYGETLKTDTDISFVSSGRSSTDRMSNPRFSYSSDTDASYSFESMHYGRKSAEISTPPEFTSLSFESDRNSSCTSQAVDDMEAEMRRLKLELKQTMEMYNTACKEALTAQQKAVELQRWKLEEERRLEEARLAEEAALAVAEMEKAKSRAAIEAAEAQKRIAELEAQKRLNAEMKAHRESEEKKKVLDALVNVDVRYRRYSIEEIEAATNFFSESLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDRLFRKGNTPSLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDGNYVAKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQMLTARTPMGLAHHVESAIEKGDLTEMLDPTVPDWPQEEVLNLAKMAVQCAELRRKDRPDLAKVVLPELNRLRELAENSNILGNSINLSHSRHVSMQLDGSNPTFSHSEEIRRNTSVGV 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00012 772 ProSiteProfiles Protein kinase domain profile. 459 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00012 772 MobiDBLite consensus disorder prediction 179 217 - -
Gabi3898g00012 772 FunFam U-box domain-containing protein 51 532 732 - -
Gabi3898g00012 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672|GO:0006468
Gabi3898g00012 772 MobiDBLite consensus disorder prediction 753 772 - -
Gabi3898g00012 772 Pfam Universal stress protein family 18 147 IPR006016 -
Gabi3898g00012 772 Gene3D Phosphorylase Kinase; domain 1 438 531 - -
Gabi3898g00012 772 PANTHER OS02G0152300 PROTEIN 18 744 - -
Gabi3898g00012 772 Pfam Protein kinase domain 461 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00012 772 Coils Coil 385 431 - -
Gabi3898g00012 772 Coils Coil 351 371 - -
Gabi3898g00012 772 CDD STK_N 17 171 - -
Gabi3898g00012 772 MobiDBLite consensus disorder prediction 262 281 - -
Gabi3898g00012 772 MobiDBLite consensus disorder prediction 179 248 - -
Gabi3898g00012 772 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 168 - -
Gabi3898g00012 772 Coils Coil 325 345 - -
Gabi3898g00012 772 Gene3D HUPs 17 169 IPR014729 -
Gabi3898g00012 772 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 431 531 - -
Gabi3898g00012 772 Gene3D Transferase(Phosphotransferase) domain 1 532 741 - -
Gabi3898g00012 772 SMART serkin_6 459 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3898g00012 772 SUPERFAMILY Protein kinase-like (PK-like) 442 718 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00012 Gabi-Chr3898 143783 148815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00012 1 732 Receptor kinase-like Gene Family AT1G78940 56.972 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi3898g00012 Pkinase 7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00012 - - gmx:100803867 1125.15