Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00011 ATGAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGGCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAAGATACTTCAGGACACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGCTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCTATCAATGATATGACAGGTAAATGGCTGGGAAATAGGCAAATACGATGCAATTGGGCAACCAAGGGTGCTAGTGGCAGCTCCAATGAAGAGAAGAACAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCTGAAAGCAATCCTTCATACACAACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATATTCAGTTCCATGCACTGGGGGCTGGGGTTATTGAGGAGGTTCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATATAGCACTCACGATGAAGCAGCATTGGCCATTCAGATGGCTAATGGAAGAATAGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCAAATCCATTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGCTATTCTCCCGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAAGCTGCTGTATCTGGCCTTTCGGGTCAAGCTCTTCTGCAAATGACCGGACAACATGGCCTAGCTCCTGCTTCAATGGGCATAAACTCTGGGGGATCTCAAGCTATGTATGATGGATATACTGGTAATTCATCAAGGCAGCAGCTTATGTACTATCGTTGA 1038 0.448 MKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEATDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGASGSSNEEKNNDNQNAVVLTNGSSDGGQDNNNEDAPESNPSYTTVYVGNLPHDVTQAELHIQFHALGAGVIEEVRVQRDKGFGFVRYSTHDEAALAIQMANGRIVRGKTMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGGSQAMYDGYTGNSSRQQLMYYR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00011 345 Gene3D - 1 44 IPR012677 -
Gabi3898g00011 345 SUPERFAMILY RNA-binding domain, RBD 159 251 IPR035979 GO:0003676
Gabi3898g00011 345 MobiDBLite consensus disorder prediction 129 174 - -
Gabi3898g00011 345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Gabi3898g00011 345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 241 IPR000504 GO:0003723
Gabi3898g00011 345 SUPERFAMILY RNA-binding domain, RBD 45 156 IPR035979 GO:0003676
Gabi3898g00011 345 CDD RRM2_PUB1 50 129 - -
Gabi3898g00011 345 FunFam Nucleolysin TIAR-like protein 49 148 - -
Gabi3898g00011 345 Gene3D - 151 251 IPR012677 -
Gabi3898g00011 345 FunFam Oligouridylate-binding protein 1C 150 251 - -
Gabi3898g00011 345 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 250 - -
Gabi3898g00011 345 SUPERFAMILY RNA-binding domain, RBD 4 44 IPR035979 GO:0003676
Gabi3898g00011 345 SMART rrm1_1 52 125 IPR000504 GO:0003723
Gabi3898g00011 345 SMART rrm1_1 174 243 IPR000504 GO:0003723
Gabi3898g00011 345 Gene3D - 45 145 IPR012677 -
Gabi3898g00011 345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 247 IPR000504 GO:0003723
Gabi3898g00011 345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00011 Gabi-Chr3898 128587 140622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00011 5 247 Eukaryotic Initiation Factors Gene Family AT2G23350 31.474 1.09e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00011 K13201 - gmx:100777108 682.174