Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00010 ATGCAACAGAGGCTCAAGTTGCAGCAGCAGCAGCAACAACAACAACAAGCCCTCATGCAACAAGCCTTGATTCAGCAGCAGCAGATGTATCACCCTGGCATGCTCGCTGCTGCTATGTCTCAGATGGAGCCTGTTCCTGGTGGAAATCTGCCTCCTGGTTTTGACACTTCTGCATGCCGTAGCGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTCGCGGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGGCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAAGATACTTCAGGACACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGCTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCTATCAATGATATGACAGGTAAATGGCTGGGAAATAGGCAAATACGATGCAATTGGGCAACCAAGGGTGCTAGTGGCAGCTCCAATGAAGAGAAGAACAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCTGAAAGCAATCCTTCATACACAACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATATTCAGTTCCATGCACTGGGGGCTGGGGTTATTGAGGAGGTTCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATATAGCACTCACGATGAAGCAGCATTGGCCATTCAGATGGCTAATGGAAGAATAGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCAAATCCATTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGCTATTCTCCCGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAAGCTGCTGTATCTGGCCTTTCGGGTCAAGCTCTTCTGCAAATGACCGGACAACATGGCCTAGCTCCTGCTTCAATGGGCATAAACTCTGGGGGATCTCAAGCTATGTATGATGGATATACTGGTAATTCATCAAGGCAGCAGCTTATGTACTATCGTTGA 1320 0.4553 MQQRLKLQQQQQQQQQALMQQALIQQQQMYHPGMLAAAMSQMEPVPGGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEATDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGASGSSNEEKNNDNQNAVVLTNGSSDGGQDNNNEDAPESNPSYTTVYVGNLPHDVTQAELHIQFHALGAGVIEEVRVQRDKGFGFVRYSTHDEAALAIQMANGRIVRGKTMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGGSQAMYDGYTGNSSRQQLMYYR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00010 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 134 IPR000504 GO:0003723
Gabi3898g00010 439 SUPERFAMILY RNA-binding domain, RBD 256 350 IPR035979 GO:0003676
Gabi3898g00010 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 341 IPR000504 GO:0003723
Gabi3898g00010 439 FunFam Oligouridylate-binding protein 1C 244 345 - -
Gabi3898g00010 439 FunFam Nucleolysin TIAR-like protein 1 143 - -
Gabi3898g00010 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Gabi3898g00010 439 FunFam Nucleolysin TIAR-like protein 144 242 - -
Gabi3898g00010 439 Gene3D - 1 143 IPR012677 -
Gabi3898g00010 439 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 41 344 - -
Gabi3898g00010 439 SUPERFAMILY RNA-binding domain, RBD 45 138 IPR035979 GO:0003676
Gabi3898g00010 439 MobiDBLite consensus disorder prediction 223 268 - -
Gabi3898g00010 439 SMART rrm1_1 268 337 IPR000504 GO:0003723
Gabi3898g00010 439 SMART rrm1_1 146 219 IPR000504 GO:0003723
Gabi3898g00010 439 SMART rrm1_1 61 130 IPR000504 GO:0003723
Gabi3898g00010 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 128 IPR000504 GO:0003723
Gabi3898g00010 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 335 IPR000504 GO:0003723
Gabi3898g00010 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Gabi3898g00010 439 SUPERFAMILY RNA-binding domain, RBD 139 250 IPR035979 GO:0003676
Gabi3898g00010 439 CDD RRM2_PUB1 144 223 - -
Gabi3898g00010 439 Gene3D - 245 345 IPR012677 -
Gabi3898g00010 439 Gene3D - 144 244 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00010 Gabi-Chr3898 126707 140622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00010 61 341 Eukaryotic Initiation Factors Gene Family AT2G23350 30.479 1.95e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00010 K13201 - gmx:100777108 829.706