Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00007 ATGGAACTCAAAAACGAGAAGCTAGTCAGGTTCTCCAATGATGGAAAGAAGAATCTTGAACATCCTTGGGAAAATATAGACAACGCTCACAAACCCCATGAGAAGCCATTCCCAGTGTACAAGATTCAGACAGCACTGAATCCTGAAGGGAAAATTAGAAGTGGTGATAAGAACAGAATGAATCTCAAAATTCCCACGCTTGGAAAGTTTAAGGTTTTCCCAGAAAATAATGAGCCATGGAATAAGAGAATTATTGATCCTGGAAGTGATATGTTTTTGGAGTGGAACCGAGCTTTCCTATTTTCTTGCATACTATCACTGTTTGTTGATCCACTGTTTTTCTACCTTCCCTCAGTAGCAAATGAAGGGAATTCATCATGTATGGCTACTGATTTGAATTTAGGAGTTGTTGTGACATGTTTCCGGACATTTGCTGATGTTTTCTATCTGATGAACTTGGCCATAAAGTTCAGGACGGCCTATGTGTCACCAAGTTCAAGAATTTTTGGGAGGGGTGAGCTTGTTATGGATTCAAAGTTGATTGCGAGGTGGTATTTGAGATCAGAGTTCTTTCTAGATCTTGTGGCTACACTGCCTCTTCCCCAGATTATGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCTCTTGGACTCATTGTTCTACTTCAATATGTCCCCAGATTATACTTGATTTTCCCATTAAGTTCCCAGATTATTAAAGCCACTGGTGTAGTTACAAAGACGGCTTGGGCTGGAGCTGCTTACAATCTTATGCTTTACATGTTAGCTAGTCATGTCTTGGGGGCATCATGGTACTTGTTGTCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAAGCCTCCCTATAAAATGTGTTCTTAAGTACTTGGATTGCGGTACTTTAAATAATGATGATCGCATGAAGTGGGCAAACACTACTTCTGTGTTTGGTAACTGCAATCCAGAAAATAGCACCAGTTTCAGATACGGAATATTTGGAAAAGCAGTGGAAAATAATGTTGTCTCCTCTGCTTTTATAGAGAAGTATCTCTATTGTCTGTGGTGGGGTTTGCAGAACTTGAGTTCCTATGGCCAGGGTTTGCCTGCAAGCACATTCGTTTGGGAAACTTCATTTGCAATACTCATAGCTATTCTTGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACATATTTACAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCGACGTGACACTGAAGAGTGGATGAAACATCGCCAGCTTCCACAATATCTCAGAGAGCGTGTCCGAAGATTTGTTCAGTACAAGTGGCTTGCAACTCGAGGGGTTGATGAAGAAACAATCTTACGAGGCCTTCCTACAGACCTACGTAGAGATATCCAACGTCACCTTTGTTTGGACCTTGTTCGACGTGTTCCCTTTTTCTCACAAATGGATGGCCAGCTACTTGATGCAATATGTGAGCGGCTGGTATCATCCTTGAGTACTCAAGGCACATACATAGTTAGAGAAGGTGATCCAGTTACAGAGATGCTTTTTATCATTAGAGGGAGACTTGAAAGCTCAACCACAAATGGAGGAAGAACTGGTTTCTTTAACTCTATTACATTGAGGCCTGGTGATTTCTGTGGAGAAGAGCTACTTGCATGGGCATTGCTTCCAAAATCTACTCTCAACTTGCCTTCTTCTACAAGAACAGTTAGAGCCCTTGTAGAAGTGGAAGCCTTTGCATTAAGAGCAGAAGATCTTAAATTTGTGGCCAATCAGTTTAGACGTCTCCACAGCAAGAAGTTACAGCATACCTTCCGTTTCTACTCTCACCATTGGAGGACATGGGCTGCTTGCTTCATTCAGGCTGCTTGGCGGCGGTACAAGAAGAGAGTGTTGGCAAAGAGCCTTAGCTTGAGGGAATCTCAGTCCTTCAATGATGATGAACAAGTCAGGGATCAAATGGAACATGAGGAAGAAGACCACAGTGCTGTGACTTCAAACACTGCACAAGTAAAACAGAACCTAGGTGTCACTATACTGGCTTCAAGATTTGCAGCAAACACAAGAAGAGGGGTTCAGAGGATCAAGGATGTAGAGATGCTCAAGTTGCAAAAGCCTGAAGAGCCAGACTTCTCAGTAGAGCCGGATGATGATTAG 2205 0.4218 MELKNEKLVRFSNDGKKNLEHPWENIDNAHKPHEKPFPVYKIQTALNPEGKIRSGDKNRMNLKIPTLGKFKVFPENNEPWNKRIIDPGSDMFLEWNRAFLFSCILSLFVDPLFFYLPSVANEGNSSCMATDLNLGVVVTCFRTFADVFYLMNLAIKFRTAYVSPSSRIFGRGELVMDSKLIARWYLRSEFFLDLVATLPLPQIMIWFIMPAIRSSHADHTNNALGLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLMLYMLASHVLGASWYLLSIERHATCWKSECRNESLPIKCVLKYLDCGTLNNDDRMKWANTTSVFGNCNPENSTSFRYGIFGKAVENNVVSSAFIEKYLYCLWWGLQNLSSYGQGLPASTFVWETSFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMKHRQLPQYLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDGQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRVLAKSLSLRESQSFNDDEQVRDQMEHEEEDHSAVTSNTAQVKQNLGVTILASRFAANTRRGVQRIKDVEMLKLQKPEEPDFSVEPDDD 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00007 734 ProSiteProfiles cAMP/cGMP binding motif profile. 493 576 IPR000595 -
Gabi3898g00007 734 Gene3D Helix hairpin bin 421 484 - -
Gabi3898g00007 734 PRINTS EAG/ELK/ERG potassium channel family signature 362 379 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3898g00007 734 PRINTS EAG/ELK/ERG potassium channel family signature 153 162 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3898g00007 734 PRINTS EAG/ELK/ERG potassium channel family signature 388 399 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3898g00007 734 PRINTS EAG/ELK/ERG potassium channel family signature 406 415 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3898g00007 734 PRINTS EAG/ELK/ERG potassium channel family signature 456 463 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3898g00007 734 Pfam Ion transport protein 95 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi3898g00007 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 76 727 - -
Gabi3898g00007 734 SUPERFAMILY Voltage-gated potassium channels 89 415 - -
Gabi3898g00007 734 Gene3D Jelly Rolls 491 611 IPR014710 -
Gabi3898g00007 734 FunFam Cyclic nucleotide-gated ion channel 1 420 484 - -
Gabi3898g00007 734 Pfam Cyclic nucleotide-binding domain 516 604 IPR000595 -
Gabi3898g00007 734 CDD CAP_ED 493 624 IPR000595 -
Gabi3898g00007 734 Gene3D - 112 419 - -
Gabi3898g00007 734 SMART cnmp_10 493 624 IPR000595 -
Gabi3898g00007 734 FunFam Cyclic nucleotide-gated ion channel 1 491 609 - -
Gabi3898g00007 734 SUPERFAMILY cAMP-binding domain-like 423 615 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00007 Gabi-Chr3898 91825 95910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00007 10 730 Ion Channels AT2G24610 70.330 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00007 K05391 - gmx:100803334 1320.84