Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00006 ATGTCTCGCGTTTATGTTGGTAACCTGGATTCTCGAGTTTCTGAGAGAGATCTTGAAGATGAATTCCATGTTTTCGGAGTTATACGGAGTGTGTGGGTTGCACGGAGACCTCCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAAGATGCTATTCGTGAATTAGATGGTAAGAATGGATGGAGGGTAGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGCGGCGGTCGATCTGGTGGTGGTGGTGGTGGTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCAGGTCATTTTGCTCGGGAGTGTCGCATGCGTGGCGGTTCTGGAAGACGCCGGAGCCGCAGTCCACCTCGATTCCGCAGGAGCCCAAGTTATGGACGAAGGAGTTACAGTCCTCGTGGGCGATCCCCTAGGCGTCGCAGCTTGTCACCTCGTGGACGCAGCTATAGCAGGTCACCTCCTTACCGTGGGCGTGAGGAGCTAACATATGCTAACGGAAATGGCGTAAGGGATCGACAACGAAGCAGAAGTTGA 555 0.5207 MSRVYVGNLDSRVSERDLEDEFHVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGGGGGGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREELTYANGNGVRDRQRSRS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00006 184 CDD RRM_SRSF3_like 3 71 - -
Gabi3898g00006 184 ProSiteProfiles Zinc finger CCHC-type profile. 95 110 IPR001878 GO:0003676|GO:0008270
Gabi3898g00006 184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Gabi3898g00006 184 FunFam Serine/arginine-rich splicing factor RSZ22A 92 152 - -
Gabi3898g00006 184 MobiDBLite consensus disorder prediction 66 184 - -
Gabi3898g00006 184 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 164 - -
Gabi3898g00006 184 MobiDBLite consensus disorder prediction 100 115 - -
Gabi3898g00006 184 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Gabi3898g00006 184 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Gabi3898g00006 184 SMART c2hcfinal6 95 111 IPR001878 GO:0003676|GO:0008270
Gabi3898g00006 184 SMART rrm1_1 3 69 IPR000504 GO:0003723
Gabi3898g00006 184 SUPERFAMILY Retrovirus zinc finger-like domains 86 112 IPR036875 GO:0003676|GO:0008270
Gabi3898g00006 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Gabi3898g00006 184 Pfam Zinc knuckle 95 110 IPR001878 GO:0003676|GO:0008270
Gabi3898g00006 184 Gene3D - 95 148 - -
Gabi3898g00006 184 Gene3D - 1 94 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00006 Gabi-Chr3898 82099 86379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00006 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 39.683 6.38e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00006 K12896 - gmx:100796961 225.328