Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3898g00002 ATGGCGGTGGAGCTTATGGGATTCCCAAAAATGGATGAACAGAAAGCAATACAAGAGGCTGCCTCTGAGGGATTAAAGGGCATGGAACACCTCATTCATCTCCTCTCCCACCAACCCTCTCACTCTCCTCTACAAGCTGACCTCACTGACGTCACCGTTTCCAAATTCAAAAAACTCATCTCCTTACTCAACCGCACCGGCCATGCCCGCTTCCGCCGCGCTCCGCTTCCCTCCTCTCCCTCTTCCCTCTCTCTCCCTCAATCCCACACTCTCACTCCATCTCCGGCCCACTTCACCTCTCCGCCGGCGGCTAATCCGGCCGTCGTTCATCACCCGCAGAGTTTGACTCTCGATTTCACAAAGCCTAATATCTTGAGCTCCAACGCCAAGTCTCTGGAGCTCGAGTTCTCTAAGGAAACATTCAGCGTTTCCTCCAACTCCTCCTTCATGTCCTCCGCCATCACCGGAGACGGCAGCGTTTCCAACGGCAAGATCTTCCTCACTCCCCCGGCGCCGGCAGTCTCCGGCGGAAAGCCTCCACTTTCATCGGCTCCGCTCAAGAAGAGGTGCCACGACCACCGCGACCATACAGACGACGTCTCCGGCCAGATCTCCGGCTCAAACAAGTGCCACTGCATCAAGAGAAGGAAAAATCGGGTGAAGAAGACGATGAGAGTGCCGGCGATTAGTTCGAAGATCGCCGATATTCCGCCGGACGAGTACTCGTGGAGGAAGTACGGTCAGAAACCGATCAAGGGGTCTCCGTACCCGAGGGGTTATTACAAGTGCAGCACGGTGAGAGGGTGTCCGGCGAGGAAACACGTGGAACGAGCTCCGGACGATCCAACGATGCTGATCGTGACGTACGAGGGGGAACACCGTCACGCGATTCAGGCCGCGATGCAGGAGAACATTTCTGGGAATGGGGGTTTGGTATTTGAGTCAACGCGAGTTTGCAATTAA 963 0.5566 MAVELMGFPKMDEQKAIQEAASEGLKGMEHLIHLLSHQPSHSPLQADLTDVTVSKFKKLISLLNRTGHARFRRAPLPSSPSSLSLPQSHTLTPSPAHFTSPPAANPAVVHHPQSLTLDFTKPNILSSNAKSLELEFSKETFSVSSNSSFMSSAITGDGSVSNGKIFLTPPAPAVSGGKPPLSSAPLKKRCHDHRDHTDDVSGQISGSNKCHCIKRRKNRVKKTMRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPTMLIVTYEGEHRHAIQAAMQENISGNGGLVFESTRVCN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3898g00002 320 MobiDBLite consensus disorder prediction 77 98 - -
Gabi3898g00002 320 MobiDBLite consensus disorder prediction 170 206 - -
Gabi3898g00002 320 Pfam Plant zinc cluster domain 187 235 IPR018872 -
Gabi3898g00002 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 300 IPR044810 GO:0003700
Gabi3898g00002 320 Pfam WRKY DNA -binding domain 239 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3898g00002 320 Gene3D WRKY domain 210 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3898g00002 320 MobiDBLite consensus disorder prediction 71 107 - -
Gabi3898g00002 320 SUPERFAMILY WRKY DNA-binding domain 235 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3898g00002 320 FunFam WRKY transcription factor 65 221 298 - -
Gabi3898g00002 320 SMART WRKY_cls 237 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3898g00002 320 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3898g00002 320 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3898g00002 Gabi-Chr3898 34154 36177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3898g00002 1 315 WRKY Transcription Factor Family AT2G24570 64.087 7.26e-124 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3898g00002 WRKY 8.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3898g00002 - - gmx:100127394 449.514