Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3895g00039 ATGAAAAAGGAAGAAACTCAAGGGCAGTGTTCTTCTCAAGAGATCAATAACAACATTCAGAGCTATCAAGAGCAGCTATTCCTTCAGCAACAACAGATGCAACAACACCAACAACAACAACAAAACGGTGATAATATCTTTGGAGGTGGAAGAGGGTTATTGTTCCCTGAAGTTTCTCCAATCTTGCAACCATGGTCCATGCCTCCGGTTCACTCCTTCAACCCGGTCCGAGACCATGACCCGTTTCTTGTCCCTCCCCAACCTTCACCCTACGCAAGCTATTTCAACAGAAGGGTTCCATCACTTCAATTTGCGTACGAGGGTCCATCTTCTGAACATCTAAGGATCATATCAGATACCCTTGGACCCATGGTTCAACCCGGTTCAGCTCCCTTTGGACTCCAAGCCGAGTTGGGTAAGATGACTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCAGCTTCCAAGAGTCACAGTGAAGCTGAAAGAAGACGCAGAGAGAGAATCAACAACCATCTTGCAAAGCTCCGTAGCTTGTTGCCCAACACAACCAAAACAGATAAAGCTTCATTGCTGGCAGAAGTGATTCAGCATGTGAAGGAACTGAAGCATCAAACATCGTTGATAGCGGAAACGAGTGCAGTGCCTACTGAGGCCGATGAACTAACGGTGGATGCAGCTGATGAGGACGGAAAGTTTGTGATAAAAGCCTCATTGTGCTGTGAAGATAGGTCAGATCTCTTAACTGACCTCATCAAAACCTTGAAAGCGTTAAGGTTAAGAACCCTCAAAGCTGAGATCACAACGCTTGCTGGGCGTGTTAAGAACGTGCTTTTCATCACTGGGGATGAGGATTCAAGTAGCAGTAGCGGAGAACAGTGTTGTATAAGTTCAATACAAGAAGCACTGAAGGCAGTGATGGAGAAGAGTGGTGGTGAGGATTCAACAGCTTCTGGGAATGTTAAACGCCAAAGGACTAATATCAACAATATCCTTGAACAAAGGTCTTTATGA 1014 0.4536 MKKEETQGQCSSQEINNNIQSYQEQLFLQQQQMQQHQQQQQNGDNIFGGGRGLLFPEVSPILQPWSMPPVHSFNPVRDHDPFLVPPQPSPYASYFNRRVPSLQFAYEGPSSEHLRIISDTLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKHQTSLIAETSAVPTEADELTVDAADEDGKFVIKASLCCEDRSDLLTDLIKTLKALRLRTLKAEITTLAGRVKNVLFITGDEDSSSSSGEQCCISSIQEALKAVMEKSGGEDSTASGNVKRQRTNINNILEQRSL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3895g00039 337 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
Gabi3895g00039 337 SMART finulus 159 208 IPR011598 GO:0046983
Gabi3895g00039 337 Coils Coil 19 39 - -
Gabi3895g00039 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Gabi3895g00039 337 CDD bHLH_AtAIG1_like 148 226 - -
Gabi3895g00039 337 MobiDBLite consensus disorder prediction 30 46 - -
Gabi3895g00039 337 FunFam transcription factor bHLH30 148 211 - -
Gabi3895g00039 337 MobiDBLite consensus disorder prediction 30 49 - -
Gabi3895g00039 337 Gene3D - 148 209 IPR036638 GO:0046983
Gabi3895g00039 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 209 IPR036638 GO:0046983
Gabi3895g00039 337 PANTHER TRANSCRIPTION FACTOR BHLH30 25 327 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3895g00039 Gabi-Chr3895 593104 595211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3895g00039 12 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 59.829 5.07e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3895g00039 HLH 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3895g00039 - - cave:132184452 456.447