Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3895g00012 ATGATACCCCCTCAGCAACAAAACACTATTACACCACACACTCCGGACATCACAAATCGGCCGGAGAACACCTCCGTCCACGCCGAATCACCAGCAAGATTTTCAATTCCTCACCAAATTCGGCGTCCTGTTACTCTCAAATTTGAGGATGTTTCATATAGCATAACCCTCGGAAGGAAGAAGAATGTTTGTGTAACTTCATCACAAGAGGCGAAGCAAACTCGCAAAGTGCTGAACGGCGTGACGGGGATAGTGGGGCCAGGGGAGTTTATGGCAATGCTGGGTCCATCAGGGAGTGGCAAGACCACCCTGCTCACCGCCCTCGCTGGCCGTCTCGCCGGAAAAGTCACCGGAACCATCACTTACAATGGCCACCCTTTCTCAAGCTTCATTAGGCGCAACACAGGGTTTGTGTCCCAAGATGACGTGTTATACCCTCACCTCACCGTTCTTGAGACACTTGCCTTCGCTGCTTTGCTCAGACTTCCCAAGAGCCTCACTAGGGAAGAGAAAGTGGAGAAAGCTGAGAATGTCATCGTTGAACTGGGGCTGTCAAGGTGCCGGAACAGCCCCGTTGGCGGCGGAACCGCCGCTTTCCGGGGTATTTCCGGCGGGGAGCGGAAGCGGGTCAGTATCGGGCAGGAGATGCTTGTGAACCCGAGTTTGTTGTTGCTCGATGAACCCACATCCGGCCTTGACTCCACGACGGCGCAACGCATCGTAGCGGTGCTCCGGAGCCTGGCACGCGGTGGCCGGACGGTGGTGACCACCATTCATCAGCCTTCTAGCCGGTTGTATAGGATGTTTGATAAGGTGGTGGTGTTGTCGGACGGGTACCCGATTTACAACGGGCAAGCGGATCGGGTCATGAATTATCTTGAGTCCATGGGCTTTGTACCCGCTTTCAGTTTCATGAACCCGGCTGATTTTCTTCTTGACCTTGCTAACGGCATAGTTGCTGATGTCAAACAGGATGATCAGATAGATCACCATGAGGATCAAGCTTCAATCAAGCAGTCCCTAGTTTCATCCTACAAGAAGAACTTATACCCTCTTCTCAAGGAAGAGATTCAGCGGAATGATAGCAATCCAGCATTTTTTACTACAGGAACACCCAGAAGTACTGAGAACCAATGGGCCACAGGCTGGTGGGAACAATTGAAGGTTCTGCTTAAGAGGGGCTTAAAGGAGAGGAGGCATGAGTCTTTTTCTGGCTTAAGGATTTTCCAAGTCTTGTCTGTCTCAATTCTTTCAGGACTTCTATGGTGGCATTCTGATTCCTCACATATACAAGATCAGGTAGGCCTGCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTTAATGCCATCTTTGCATTTCCATTGGACCGGCCAATGCTGATGAAAGAACGATCATCAGGCATGTACCATCTCTCCTCCTACTACATTGCCAGGATGGTTGGGGACTTACCAATGGAGCTTGCTCTTCCTACCATCTTTGTAACCATCACCTACTGGATGAGTGGTCTCAAGCCTTCACTGGTTACATTTGTGTTAACCCTCTTGATCATGCTTTTTAATGTGCTAGTCTCTCAAGGAATAGGCCTAGCACTTGGTGCCATTCTAATGGATGTTAAACAGGCCACAACTCTAGCTTCAGTAACAATGCTGGTGTTTCTTTTAGCTGGTGGTTACTATATTCAGCAAATGCCATCTTTTATAGCTTGGTTGAAGTACATTTCTTTTAGTCACTATAGCTATGAGCTTCTGGTAGGAGTTCAGTACTCGGTAAATGAGGTTTATGAGTGCGGACCAAGGTTATATTGTAGGATAAGAGATTTTCCTGCCATTAAGTGTCTCGGGCTTGATAATATGTGGGGAGATGTGGCTGTGTTGACTGTAATGTTGATTGGATACAGAGTTGTGGCTTATCTAGCTTTGAGGATGGGGCTGCATCATTGA 1950 0.4851 MIPPQQQNTITPHTPDITNRPENTSVHAESPARFSIPHQIRRPVTLKFEDVSYSITLGRKKNVCVTSSQEAKQTRKVLNGVTGIVGPGEFMAMLGPSGSGKTTLLTALAGRLAGKVTGTITYNGHPFSSFIRRNTGFVSQDDVLYPHLTVLETLAFAALLRLPKSLTREEKVEKAENVIVELGLSRCRNSPVGGGTAAFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIVAVLRSLARGGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYNGQADRVMNYLESMGFVPAFSFMNPADFLLDLANGIVADVKQDDQIDHHEDQASIKQSLVSSYKKNLYPLLKEEIQRNDSNPAFFTTGTPRSTENQWATGWWEQLKVLLKRGLKERRHESFSGLRIFQVLSVSILSGLLWWHSDSSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLDRPMLMKERSSGMYHLSSYYIARMVGDLPMELALPTIFVTITYWMSGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPSFIAWLKYISFSHYSYELLVGVQYSVNEVYECGPRLYCRIRDFPAIKCLGLDNMWGDVAVLTVMLIGYRVVAYLALRMGLHH 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3895g00012 649 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 640 - -
Gabi3895g00012 649 Pfam ABC transporter 78 230 IPR003439 GO:0005524
Gabi3895g00012 649 CDD ABCG_EPDR 43 284 - -
Gabi3895g00012 649 ProSitePatterns ABC transporters family signature. 202 216 IPR017871 GO:0005524|GO:0016887
Gabi3895g00012 649 Gene3D - 59 297 IPR027417 -
Gabi3895g00012 649 MobiDBLite consensus disorder prediction 1 33 - -
Gabi3895g00012 649 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 302 IPR003439 GO:0005524
Gabi3895g00012 649 FunFam ABC transporter G family member 22 65 296 - -
Gabi3895g00012 649 Pfam ABC-2 type transporter 259 324 IPR043926 GO:0140359
Gabi3895g00012 649 MobiDBLite consensus disorder prediction 1 30 - -
Gabi3895g00012 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 296 IPR027417 -
Gabi3895g00012 649 Pfam ABC-2 type transporter 385 591 IPR013525 GO:0016020|GO:0140359
Gabi3895g00012 649 SMART AAA_5 87 280 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3895g00012 Gabi-Chr3895 218270 222221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3895g00012 76 278 Calmodulin-binding Proteins AT2G36910 31.308 1.39e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3895g00012 K05681 - gmx:100810165 1041.18