Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3895g00008 ATGTCATCTCTTGTTTTAATCTCAGCTACAAAAAATCAATTTAATGGCTCTCTTCCATCCAACATGTTCCTCACTCTTCCCAATCTCCAAGCGATTGCAATTGGCAGGAATCAAATCTCAGGTACAATCCCCATTTCCATTGCAAATACTTCTGTCCTTCAAGCACTTGATTTTGGTAATAACAATTTCGTGGGACAAGTTCCAAGTCTAGGCAAGCTACAAGATCTTCTCATACTAAGATTTACCAATAACAGTCTAGGTGACAATTTAACCACGGATTTGGAGTTTTTAAAATCATTAACAAATTGTAGTAAGTTGCAATGGTTAGATCTGGCCGACAATAACTTTGGAGGTCGTTTGCCAAATTGCTTGGGAAATTTATCCTCCCAACTCAGTAAACTATATATTGGGGGTAATGAGATATCAGGACAAATTCCAGCAGAATTAGGAAATCTATATAGCTTAATTGTCTTGGGTATAGAAAATAACCATCTTGAGGGGATTATTCCATCTGCTTTTGGAAAGTTTCAGAATATGCAACTTCTAGCATTGAGTGGAAACAAGCTGTCAGGAGTTATACCATTCATCATAGGAAACCTCAGTTTGTTGTATCATTTGGGTTTAGACCAAAATTTGTTAGAAGGAAATATTCCTCTAAGTATACGAAATTGCCAAAAGTTACAATATTTGGACCTTTCCCAAAATGATCTTAGAGGAACCATACCCTTAGAGGTTTTTAGTCTTTCCTCTTTGACAAATTCACTAGACTTGTCCCACAACTCATTAAGTGGTAGTCTACCAGCTGAAGTGGGCCAATTGAAAAATATTGATTACCTGGATGTCTCTAAGAATCATCTATCTGGTAATATTCCTGTAACCATTGGAGAATGCTCAAGCTTGGAGTACCTCTATTTGCAGGAGAATTCCTTCCATGGAATCATTCCATCCTCTTTGGCTTCACTAAAAGGTCTTCAAAAATTAGACCTATCCCGGAATCACTTGTCTGGGTCGATTCCTGATGTTTTGCAGAATATTCATTTCTTAGAATACTTAAATGTATCATTTAACATGTTGGATGGTGAGGTACCAACTGAAGGTGTCTTTCAATATGCAAGCAAGTTAGCAGTGATTAGAAACAATAATCTTTGTGGAGGTGTTTTAGAGCTACATCTATCGCCATGCCCTGTCAAAGGTGATAAACATGTAAAACACCATAATTTCAAGTTGATAGCAGTGATGATTAGTGTGGTTGCTTTTCTTCTCATATTGTCATCCATGTCCACTTTCTACTGGATGAGAAAAAAAAACAAGAAATCATCTTCTGATTCACCAACAATTGACCAGCTAGCCAAGGTTTCATACCAAAACCTACACCGTGGAACCGATGGGTTTTCAATAAGAAACTTGATAGGATCTGGAAGTTTTGGCTCTGTATACAAAGGAATTATTGAGCCAGAAGACACAGTTGTTGCGATAAAGGTCCTAAATCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCAGAATGCAATGCACTCAAAAATATTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTTCAGCACAGATTTCAAAGGTCAAGAATTTCAAGCTCTAGTTTTTGAGTATATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAACAGAAATTGTAGCTCAGCCTAGATCATTAAACCTTGAGGAAAGGTTTAATATTATTAACGATGTTGCTTATGCAATTCATTATCTTCACTACGAATGTGAGCAAGCTATCATTCATTGTGATTTGAAGCCTGGCAATGTTCTTCTTGATGATTGTTTGGTAGCTCATGTCAGTGATTTCGGTCTAGCAAGATTGCTCTCAAGTGATGGAGTCTCTTTCATGCAAAGTAGCACAATTGGAATAAAGGGAACTATTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAACTAAAGGCGACATGTATAGCTTCGGAATTCTGATTTTAGAAATGTTAACCGGAAAGAGACCCACTGATGAAATGTTTAAAGATGGTCATACTCTCCACAATTATGTTAAAATTTCACTTTTGAATCACCTTTTGCAGATTGTGGACCAGACTATTCTCACTGTTGAAGAAAATGCTACTAAGAATAAAAACCTTGGCCTTATGCATCCTAATGCAGAAAACTGTTTGCATTCGCTTTTTAAGATTGCACTTGCTTGTTCGGTGGAATCACCAAAAGAAAGAATGAGTATGATTGATGTCAGCAAGGAGCTTAATCTAATCAAAAGTTTCTTCCCTTCCAAAATTTAA 2319 0.3704 MSSLVLISATKNQFNGSLPSNMFLTLPNLQAIAIGRNQISGTIPISIANTSVLQALDFGNNNFVGQVPSLGKLQDLLILRFTNNSLGDNLTTDLEFLKSLTNCSKLQWLDLADNNFGGRLPNCLGNLSSQLSKLYIGGNEISGQIPAELGNLYSLIVLGIENNHLEGIIPSAFGKFQNMQLLALSGNKLSGVIPFIIGNLSLLYHLGLDQNLLEGNIPLSIRNCQKLQYLDLSQNDLRGTIPLEVFSLSSLTNSLDLSHNSLSGSLPAEVGQLKNIDYLDVSKNHLSGNIPVTIGECSSLEYLYLQENSFHGIIPSSLASLKGLQKLDLSRNHLSGSIPDVLQNIHFLEYLNVSFNMLDGEVPTEGVFQYASKLAVIRNNNLCGGVLELHLSPCPVKGDKHVKHHNFKLIAVMISVVAFLLILSSMSTFYWMRKKNKKSSSDSPTIDQLAKVSYQNLHRGTDGFSIRNLIGSGSFGSVYKGIIEPEDTVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCFSTDFKGQEFQALVFEYMTNGSLESWLHPATEIVAQPRSLNLEERFNIINDVAYAIHYLHYECEQAIIHCDLKPGNVLLDDCLVAHVSDFGLARLLSSDGVSFMQSSTIGIKGTIGYAPPEYGMGSEVSTKGDMYSFGILILEMLTGKRPTDEMFKDGHTLHNYVKISLLNHLLQIVDQTILTVEENATKNKNLGLMHPNAENCLHSLFKIALACSVESPKERMSMIDVSKELNLIKSFFPSKI 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3895g00008 772 Gene3D Phosphorylase Kinase; domain 1 424 545 - -
Gabi3895g00008 772 SMART serkin_6 464 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3895g00008 772 Gene3D Ribonuclease Inhibitor 1 394 IPR032675 -
Gabi3895g00008 772 SUPERFAMILY RNI-like 2 187 - -
Gabi3895g00008 772 PRINTS Leucine-rich repeat signature 321 334 - -
Gabi3895g00008 772 PRINTS Leucine-rich repeat signature 227 240 - -
Gabi3895g00008 772 Pfam Protein kinase domain 466 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3895g00008 772 FunFam LRR receptor-like serine/threonine-protein kinase EFR 434 545 - -
Gabi3895g00008 772 SUPERFAMILY L domain-like 129 384 - -
Gabi3895g00008 772 FunFam LRR receptor-like serine/threonine-protein kinase EFR 91 400 - -
Gabi3895g00008 772 Gene3D Transferase(Phosphotransferase) domain 1 546 768 - -
Gabi3895g00008 772 Pfam Leucine Rich Repeat 105 127 IPR001611 GO:0005515
Gabi3895g00008 772 ProSitePatterns Protein kinases ATP-binding region signature. 470 493 IPR017441 GO:0005524
Gabi3895g00008 772 Pfam Leucine rich repeat 156 213 IPR001611 GO:0005515
Gabi3895g00008 772 Pfam Leucine rich repeat 299 358 IPR001611 GO:0005515
Gabi3895g00008 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Gabi3895g00008 772 SMART LRR_typ_2 321 344 IPR003591 -
Gabi3895g00008 772 SMART LRR_typ_2 248 273 IPR003591 -
Gabi3895g00008 772 SMART LRR_typ_2 152 175 IPR003591 -
Gabi3895g00008 772 ProSiteProfiles Protein kinase domain profile. 464 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3895g00008 772 SUPERFAMILY Protein kinase-like (PK-like) 437 762 IPR011009 -
Gabi3895g00008 772 PANTHER OS04G0122200 PROTEIN 1 762 - -
Gabi3895g00008 772 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 546 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3895g00008 Gabi-Chr3895 127650 130405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3895g00008 1 768 Receptor kinase-like Gene Family AT3G47570 46.410 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi3895g00008 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3895g00008 - - gmx:100792724 1061.98