Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3895g00004 ATGACCTGTTTTCCTTTCTTATTCAGTAAAGTGTCTTCAGCAAGACAAGATCCAGACATTGATGAAGGTATTCATAATGTTAGAGTCTATCCCTACAAAGAACTTAGAAATGCTACTGAGGATTTTAGTCCAGCCAAAAAAATAGGAGAGGGCGGTTTTGGTTCTGTCTATAAGGGACGACTTAAAGATGGAAAAATTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAAACAAGGGGTGAGGGAATTCTTGACAGAGATTAATGTGATCGCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAAACAATAACAGAATATTAGTCTACAATTACCTTGAGAACAACAGCCTTGCACAAACTCTTCTAGGTAGAGGTCACAGTAGTATCTACTTCAGTTGGCAAACACGATCTAGAATATGCATCGGTGTTGCACGTGGGCTTGCTTTTCTTCACGAAGAAGTAAGGCCTCCTATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACGCCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCAAACATGACTCACGTCAGCACACGTGTAGCTGGAACAATAGGTTATTTGGCACCGGAGTATGCAATAGGGGGGAAGCTGACACGGAAAGCAGACATTTACAGTTTTGGTGTCCTCCTTATGGAGATAGTCAGTGGCAGATGTAACACAAATTCACAATTACCAATAGGAGAGCAATATCTTCTAGAGAAAACATGGGAACTTTATCAGAGGAAGGAATTGGTATGGCTGGTAGATATATCACTAAACGGAGAATTTGATGCTGAGCAGGCTTGTAAATTTCTGAAGATTGGCCTTCTTTGCACTCAAGAATCTCCGAAGCTCCGGCCATCCATGTCTTCCGTGGTGAAGATGCTTACCGGAGAAATGGATGTTGATGACAGCAAGATTACAGAACCTGCCTTAATTTCTGATTTTATGGATCTCAAAGTTAAAAGGAAAAATGAAAGTGATAATGATATGAAAACATCTTTACATAATACATCTTCTGCCTCAGGCAACCATGATACTACCATGTCATCAGCTGCTTCAACTGCTGCAACTACAACCTTCACTGTATGA 1143 0.3972 MTCFPFLFSKVSSARQDPDIDEGIHNVRVYPYKELRNATEDFSPAKKIGEGGFGSVYKGRLKDGKIAAIKVLSAESKQGVREFLTEINVIAEIEHENLVKLYGCCVENNNRILVYNYLENNSLAQTLLGRGHSSIYFSWQTRSRICIGVARGLAFLHEEVRPPIVHRDIKASNILLDKDLTPKISDFGLAKLIPSNMTHVSTRVAGTIGYLAPEYAIGGKLTRKADIYSFGVLLMEIVSGRCNTNSQLPIGEQYLLEKTWELYQRKELVWLVDISLNGEFDAEQACKFLKIGLLCTQESPKLRPSMSSVVKMLTGEMDVDDSKITEPALISDFMDLKVKRKNESDNDMKTSLHNTSSASGNHDTTMSSAASTAATTTFTV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3895g00004 380 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3895g00004 380 SUPERFAMILY Protein kinase-like (PK-like) 21 313 IPR011009 -
Gabi3895g00004 380 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3895g00004 380 ProSiteProfiles Protein kinase domain profile. 42 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3895g00004 380 CDD STKc_IRAK 48 315 - -
Gabi3895g00004 380 Gene3D Phosphorylase Kinase; domain 1 12 117 - -
Gabi3895g00004 380 FunFam cold-responsive protein kinase 1 118 329 - -
Gabi3895g00004 380 Gene3D Transferase(Phosphotransferase) domain 1 118 327 - -
Gabi3895g00004 380 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Gabi3895g00004 380 MobiDBLite consensus disorder prediction 349 380 - -
Gabi3895g00004 380 FunFam cold-responsive protein kinase 1 13 117 - -
Gabi3895g00004 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Gabi3895g00004 380 MobiDBLite consensus disorder prediction 344 380 - -
Gabi3895g00004 380 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 26 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3895g00004 Gabi-Chr3895 44200 49799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3895g00004 15 358 Receptor kinase-like Gene Family AT1G07650 49.570 4.94e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3895g00004 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3895g00004 - - gmx:100782320 622.083