Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3894g00006 ATGAGTGGTCGGTTTTCTCGCACAATTTATGTTGGCAACCTGCCCTCCGATATAAGAGAATCCGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGATCCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCAATTCGGGGTCGAGATGGATACAACTTCGATGGTTGCAGGTTAAGGGTGGAGCTTGCCCATGGCGGTAGAGGGCCATCATCAAGTGACCGACGGGGATACAGTGGCGGTGGCGGTGGCGGTGGAGGTGGAGGTGGTGGCGGCCGCGGTGGCGGTGATGGAGGTGGTGGGGGGCGTTTTGGGGTCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCATGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGTCTTGTTGACTACACTAATTATGACGACATGAAATATGCTATTCGGAAACTGGATGACACTGAATTTAGAAATCCTTGGGCTAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCACGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCAAAGAGGGCTAGAAGCAGATCTTTGGAGCGATCTGTATCTAGGTCACGATCTAGATCCAGATCAGCATCACCAATCAAATCTTCCAGGCCAAGATCACGTTCACGATCTGGATCTCCACGCCAGGTGCTGTCAGGTAGCGGTTGA 810 0.4951 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYSGGGGGGGGGGGGGRGGGDGGGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSPKRARSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVLSGSG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3894g00006 269 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 260 - -
Gabi3894g00006 269 Gene3D - 128 205 IPR012677 -
Gabi3894g00006 269 MobiDBLite consensus disorder prediction 239 269 - -
Gabi3894g00006 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gabi3894g00006 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 192 IPR000504 GO:0003723
Gabi3894g00006 269 Gene3D - 2 126 IPR012677 -
Gabi3894g00006 269 CDD RRM2_SF2_plant_like 128 203 - -
Gabi3894g00006 269 MobiDBLite consensus disorder prediction 81 119 - -
Gabi3894g00006 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 206 IPR000504 GO:0003723
Gabi3894g00006 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gabi3894g00006 269 MobiDBLite consensus disorder prediction 224 238 - -
Gabi3894g00006 269 FunFam serine/arginine-rich splicing factor SR34A-like 128 205 - -
Gabi3894g00006 269 SMART rrm1_1 129 198 IPR000504 GO:0003723
Gabi3894g00006 269 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gabi3894g00006 269 MobiDBLite consensus disorder prediction 205 269 - -
Gabi3894g00006 269 SUPERFAMILY RNA-binding domain, RBD 6 198 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3894g00006 Gabi-Chr3894 31433 37937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3894g00006 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 2.53e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3894g00006 K12890 - gmx:100800653 367.851