Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3891g00007 ATGATTGCGTTTGTCTTTGATAAGATATGTATATATGCTTTGTTCAGTTATGATAATTGCTTATATGATGTTTTGTATATTATGTATCTGACTGTCATGCAGGAAGTGAGCCCAGGGTATGGAGGGTTTTCCATAAACCTGGAGTTTACTAGAGATTCGTCTCTAACCCCGTTTGGGGATATGATTTCAGTAACACAGTTAATTGAAGAGCCTCATGGGACCAGGACACTAACCGTGGCTAGAGGTCTTTTAGTATCATCCAGCACAATTGACATTATAGCTTCATACTGCATTGGCGTTTATAAAGGACTATTGCAATTTTTTGGCGTGAATAGAGCTTGGAGATACCATGGAATTGACGTTGAGAACGGAAAAGGCACGGGAAGGTATCTCCTACCATACTTTATTGTCAGATTTGTATTGGGTGTCGTAGCTTTCATTGTACTGTTAATCTACAAATGGGGAAGAAGACATACATCAAACTATGAAAATATCGAAGATTTTCTGCAAGAAAATACCTTCATGCCAATAAGGTACTCATACAAAGAAATAAAGCAGATGACCAGAGGTTTTAAAGAAAAGCTGGGTCAAGGAGGGTTCGGTATGGTGTATAAAGGAAAGTTACGTAGTGGGCCATTTGTAGCCATAAAGATGTTGAGTAAATCAAAGGCTAATGGGCAAGAATTCATCAGTGAAGTCGCAACCATAGGTAGAATACACCATGCCAATGTGGTTCGACTTATTGGATTTTGTGTTGAGGCATCAAAACGTGCCCTTGTGTATGAATTCATGCCCAATGGCTCTCTTGATAGACATATTTTCTCGAAAGAGGATAGTATTTCTTTAACTTACGAGCAAATATATGAGATTTCTCTTGGAGTGGTTCGTGGCATTGCTTATCTGCATCAAGGCTGTGACATGCAGATTTTGCATTTTGACATCAAGCCCCATAACATCCTTCTTGATGAGAACTTTATCCCTAAGGTTTCAGACTTTGGCCTCGCAAAGCTTTATCCAATAGACAAAAGTATTGTGACTTTGACAGCAGCAAGGGGAACAATTGGATACATGGCTCCTGAATTATTCTACCGTAATATTGGGGGAGTATCGTACAAAGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGCAGGAGAAAAAACTTGAACAAACAAGCAGAGCATTCAAGCGAGCTTTTCTTCCCTCTTTGGATTTATGATCAATTGAGCAGAGAAAATGAGTTGGAAATGGAAGATATTACCGAGGAAAAGAATGATGAGGCAAAGAAGATGTTCATAGTTGCATTATGGTGTATACAGTTAAAACCAAGCGATCGTCCTTCAATGAACAAAGTAGTAGAGATGCTGGAAGGAGAAATTGAGGGCATTGATATGCCACCAAAACCTTCCTTATATCCACATGAAATGATGCAAGAGGATCTCACAACCAACTCAGACCAAACTCTATCAGACGATTCTATTGGTTCTACAAGTTATCTTGAGGAAAGTTATGTTCATACTTTATACAAGTATTCTGCTTCATAA 1554 0.3874 MIAFVFDKICIYALFSYDNCLYDVLYIMYLTVMQEVSPGYGGFSINLEFTRDSSLTPFGDMISVTQLIEEPHGTRTLTVARGLLVSSSTIDIIASYCIGVYKGLLQFFGVNRAWRYHGIDVENGKGTGRYLLPYFIVRFVLGVVAFIVLLIYKWGRRHTSNYENIEDFLQENTFMPIRYSYKEIKQMTRGFKEKLGQGGFGMVYKGKLRSGPFVAIKMLSKSKANGQEFISEVATIGRIHHANVVRLIGFCVEASKRALVYEFMPNGSLDRHIFSKEDSISLTYEQIYEISLGVVRGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDKSIVTLTAARGTIGYMAPELFYRNIGGVSYKADVYSFGMLLMEMASRRKNLNKQAEHSSELFFPLWIYDQLSRENELEMEDITEEKNDEAKKMFIVALWCIQLKPSDRPSMNKVVEMLEGEIEGIDMPPKPSLYPHEMMQEDLTTNSDQTLSDDSIGSTSYLEESYVHTLYKYSAS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3891g00007 517 Gene3D Phosphorylase Kinase; domain 1 163 263 - -
Gabi3891g00007 517 SUPERFAMILY Protein kinase-like (PK-like) 173 460 IPR011009 -
Gabi3891g00007 517 Pfam Protein kinase domain 192 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00007 517 ProSitePatterns Protein kinases ATP-binding region signature. 195 217 IPR017441 GO:0005524
Gabi3891g00007 517 PANTHER RUST RESISTANCE KINASE LR10-RELATED 161 480 IPR045874 GO:0004672
Gabi3891g00007 517 FunFam PR5-like receptor kinase 264 470 - -
Gabi3891g00007 517 Coils Coil 409 429 - -
Gabi3891g00007 517 Gene3D Transferase(Phosphotransferase) domain 1 264 466 - -
Gabi3891g00007 517 SMART serkin_6 189 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00007 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Gabi3891g00007 517 FunFam serine/threonine-protein kinase PBS1-like 157 263 - -
Gabi3891g00007 517 CDD STKc_IRAK 195 461 - -
Gabi3891g00007 517 ProSiteProfiles Protein kinase domain profile. 189 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3891g00007 Gabi-Chr3891 60837 64830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3891g00007 129 515 Receptor kinase-like Gene Family AT4G18250 45.202 1.74e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3891g00007 Pkinase 7.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3891g00007 - - pvu:PHAVU_001G075800g 615.15