Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3891g00006 ATGATTGCGTTTGTCTTTGATAAGATATGTATATATGCTTTGTTCAGTTATGATAATTGCTTATATGATGTTTTGTATATTATGTATCTGACTGTCATGCAGGAAGTGAGCCCAGGGTATGGAGGGTTTTCCATAAACCTGGAGTTTACTAGAGATTCGTCTCTAACCCCGTTTGGGGATATGATTTCAGTAACACAGTTAATTGAAGAGCCTCATGGGACCAGGACACTAACCGTGGCTAGAGGTCTTTTAGTATCATCCAGCACAATTGACATTATAGGACTATTGCAATTTTTTGGCGTGAATAGAGCTTGGAGATACCATGGAATTGACGTTGAGAACGGAAAAGGCACGGGAAGGTATCTCCTACCATACTTTATTGTCAGATTTGTATTGGGTGTCGTAGCTTTCATTGTACTGTTAATCTACAAATGGGGAAGAAGACATACATCAAACTATGAAAATATCGAAGATTTTCTGCAAGAAAATACCTTCATGCCAATAAGGTACTCATACAAAGAAATAAAGCAGATGACCAGAGGTTTTAAAGAAAAGCTGGGTCAAGGAGGGTTCGGTATGGTGTATAAAGGAAAGTTACGTAGTGGGCCATTTGTAGCCATAAAGATGTTGAGTAAATCAAAGGCTAATGGGCAAGAATTCATCAGTGAAGTCGCAACCATAGGTAGAATACACCATGCCAATGTGGTTCGACTTATTGGATTTTGTGTTGAGGCATCAAAACGTGCCCTTGTGTATGAATTCATGCCCAATGGCTCTCTTGATAGACATATTTTCTCGAAAGAGGATAGTATTTCTTTAACTTACGAGCAAATATATGAGATTTCTCTTGGAGTGGTTCGTGGCATTGCTTATCTGCATCAAGGCTGTGACATGCAGATTTTGCATTTTGACATCAAGCCCCATAACATCCTTCTTGATGAGAACTTTATCCCTAAGGTTTCAGACTTTGGCCTCGCAAAGCTTTATCCAATAGACAAAAGTATTGTGACTTTGACAGCAGCAAGGGGAACAATTGGATACATGGCTCCTGAATTATTCTACCGTAATATTGGGGGAGTATCGTACAAAGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGCAGGAGAAAAAACTTGAACAAACAAGCAGAGCATTCAAGCGAGCTTTTCTTCCCTCTTTGGATTTATGATCAATTGAGCAGAGAAAATGAGTTGGAAATGGAAGATATTACCGAGGAAAAGAATGATGAGGCAAAGAAGATGTTCATAGTTGCATTATGGTGTATACAGTTAAAACCAAGCGATCGTCCTTCAATGAACAAAGTAGTAGAGATGCTGGAAGGAGAAATTGAGGGCATTGATATGCCACCAAAACCTTCCTTATATCCACATGAAATGATGCAAGAGGATCTCACAACCAACTCAGACCAAACTCTATCAGACGATTCTATTGGTTCTACAAGTTATCTTGAGGAAAGTTATGTTCATACTTTATACAAGTATTCTGCTTCATAA 1527 0.3877 MIAFVFDKICIYALFSYDNCLYDVLYIMYLTVMQEVSPGYGGFSINLEFTRDSSLTPFGDMISVTQLIEEPHGTRTLTVARGLLVSSSTIDIIGLLQFFGVNRAWRYHGIDVENGKGTGRYLLPYFIVRFVLGVVAFIVLLIYKWGRRHTSNYENIEDFLQENTFMPIRYSYKEIKQMTRGFKEKLGQGGFGMVYKGKLRSGPFVAIKMLSKSKANGQEFISEVATIGRIHHANVVRLIGFCVEASKRALVYEFMPNGSLDRHIFSKEDSISLTYEQIYEISLGVVRGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDKSIVTLTAARGTIGYMAPELFYRNIGGVSYKADVYSFGMLLMEMASRRKNLNKQAEHSSELFFPLWIYDQLSRENELEMEDITEEKNDEAKKMFIVALWCIQLKPSDRPSMNKVVEMLEGEIEGIDMPPKPSLYPHEMMQEDLTTNSDQTLSDDSIGSTSYLEESYVHTLYKYSAS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3891g00006 508 Pfam Protein kinase domain 183 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00006 508 ProSiteProfiles Protein kinase domain profile. 180 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00006 508 FunFam serine/threonine-protein kinase PBS1-like 148 254 - -
Gabi3891g00006 508 ProSitePatterns Protein kinases ATP-binding region signature. 186 208 IPR017441 GO:0005524
Gabi3891g00006 508 Coils Coil 400 420 - -
Gabi3891g00006 508 Gene3D Phosphorylase Kinase; domain 1 154 254 - -
Gabi3891g00006 508 PANTHER RUST RESISTANCE KINASE LR10-RELATED 152 471 IPR045874 GO:0004672
Gabi3891g00006 508 CDD STKc_IRAK 186 452 - -
Gabi3891g00006 508 SMART serkin_6 180 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00006 508 FunFam PR5-like receptor kinase 255 461 - -
Gabi3891g00006 508 SUPERFAMILY Protein kinase-like (PK-like) 164 451 IPR011009 -
Gabi3891g00006 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Gabi3891g00006 508 Gene3D Transferase(Phosphotransferase) domain 1 255 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3891g00006 Gabi-Chr3891 60837 64830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3891g00006 120 506 Receptor kinase-like Gene Family AT4G18250 45.202 1.15e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3891g00006 Pkinase 7.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3891g00006 - - mtr:120580205 613.994