Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3891g00005 ATGATTTCAGTAACACAGTTAATTGAAGAGCCTCATGGGACCAGGACACTAACCGTGGCTAGAGGTCTTTTAGTATCATCCAGCACAATTGACATTATAGCTTCATACTGCATTGGCGTTTATAAAGGACTATTGCAATTTTTTGGCGTGAATAGAGCTTGGAGATACCATGGAATTGACGTTGAGAACGGAAAAGGCACGGGAAGGTATCTCCTACCATACTTTATTGTCAGATTTGTATTGGGTGTCGTAGCTTTCATTGTACTGTTAATCTACAAATGGGGAAGAAGACATACATCAAACTATGAAAATATCGAAGATTTTCTGCAAGAAAATACCTTCATGCCAATAAGGTACTCATACAAAGAAATAAAGCAGATGACCAGAGGTTTTAAAGAAAAGCTGGGTCAAGGAGGGTTCGGTATGGTGTATAAAGGAAAGTTACGTAGTGGGCCATTTGTAGCCATAAAGATGTTGAGTAAATCAAAGGCTAATGGGCAAGAATTCATCAGTGAAGTCGCAACCATAGGTAGAATACACCATGCCAATGTGGTTCGACTTATTGGATTTTGTGTTGAGGCATCAAAACGTGCCCTTGTGTATGAATTCATGCCCAATGGCTCTCTTGATAGACATATTTTCTCGAAAGAGGATAGTATTTCTTTAACTTACGAGCAAATATATGAGATTTCTCTTGGAGTGGTTCGTGGCATTGCTTATCTGCATCAAGGCTGTGACATGCAGATTTTGCATTTTGACATCAAGCCCCATAACATCCTTCTTGATGAGAACTTTATCCCTAAGGTTTCAGACTTTGGCCTCGCAAAGCTTTATCCAATAGACAAAAGTATTGTGACTTTGACAGCAGCAAGGGGAACAATTGGATACATGGCTCCTGAATTATTCTACCGTAATATTGGGGGAGTATCGTACAAAGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGCAGGAGAAAAAACTTGAACAAACAAGCAGAGCATTCAAGCGAGCTTTTCTTCCCTCTTTGGATTTATGATCAATTGAGCAGAGAAAATGAGTTGGAAATGGAAGATATTACCGAGGAAAAGAATGATGAGGCAAAGAAGATGTTCATAGTTGCATTATGGTGTATACAGTTAAAACCAAGCGATCGTCCTTCAATGAACAAAGTAGTAGAGATGCTGGAAGGAGAAATTGAGGGCATTGATATGCCACCAAAACCTTCCTTATATCCACATGAAATGATGCAAGAGGATCTCACAACCAACTCAGACCAAACTCTATCAGACGATTCTATTGGTTCTACAAGTTATCTTGAGGAAAGTTATGTTCATACTTTATACAAGTATTCTGCTTCATAA 1374 0.3894 MISVTQLIEEPHGTRTLTVARGLLVSSSTIDIIASYCIGVYKGLLQFFGVNRAWRYHGIDVENGKGTGRYLLPYFIVRFVLGVVAFIVLLIYKWGRRHTSNYENIEDFLQENTFMPIRYSYKEIKQMTRGFKEKLGQGGFGMVYKGKLRSGPFVAIKMLSKSKANGQEFISEVATIGRIHHANVVRLIGFCVEASKRALVYEFMPNGSLDRHIFSKEDSISLTYEQIYEISLGVVRGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDKSIVTLTAARGTIGYMAPELFYRNIGGVSYKADVYSFGMLLMEMASRRKNLNKQAEHSSELFFPLWIYDQLSRENELEMEDITEEKNDEAKKMFIVALWCIQLKPSDRPSMNKVVEMLEGEIEGIDMPPKPSLYPHEMMQEDLTTNSDQTLSDDSIGSTSYLEESYVHTLYKYSAS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3891g00005 457 FunFam serine/threonine-protein kinase PBS1-like 97 203 - -
Gabi3891g00005 457 Coils Coil 349 369 - -
Gabi3891g00005 457 Pfam Protein kinase domain 132 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00005 457 ProSiteProfiles Protein kinase domain profile. 129 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00005 457 FunFam PR5-like receptor kinase 204 410 - -
Gabi3891g00005 457 SMART serkin_6 129 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00005 457 Gene3D Transferase(Phosphotransferase) domain 1 204 406 - -
Gabi3891g00005 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Gabi3891g00005 457 CDD STKc_IRAK 135 401 - -
Gabi3891g00005 457 Gene3D Phosphorylase Kinase; domain 1 103 203 - -
Gabi3891g00005 457 SUPERFAMILY Protein kinase-like (PK-like) 113 400 IPR011009 -
Gabi3891g00005 457 PANTHER RUST RESISTANCE KINASE LR10-RELATED 101 420 IPR045874 GO:0004672
Gabi3891g00005 457 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3891g00005 Gabi-Chr3891 60837 66181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3891g00005 69 455 Receptor kinase-like Gene Family AT4G18250 45.202 6.09e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3891g00005 Pkinase 5.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3891g00005 - - pvu:PHAVU_001G075800g 615.15