Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3891g00004 ATGGAAAGGAGAGCAATATCCTCAGTAGCTACTATTCTTCTCCTATTCTTACAAACTTGTCCAGCTTCCTCTGTCTTACCCATCCACCATTGTCCTGCTTCCTCCTGTGGCAATACTCCCAACATAAGTTACCCATTTCGACTCTCAAGTGACCCACCCAACTGCGGCGACAAGAGGTACGAACTAGATTGCGAGAACAACGCAACAATGTTAAATTTGTTTTCAGGGAAGTATTATGTACATGAAATCGATTACAAGAGATACACAATCAGAGTGAGTGACAGGGGTGTTGTGGAGGACACTACTTGCTCCTTTATCCCCCGCTATTTCTTATATTCTCTCAATTTCAGTCAAAATATCATTGGTCCTGGAACAGATCTGCTAAATTTGGAGCCGTTTGATGTTCCGACAATAGCGTACTTCAACTGTACCAATCCAATCACTGACGATCCTCGATATGTGAAGGTGGATACCACTCGTTGTGGCTCGAGTGGGCATATCTATACTGTTCTGAAAGATTCATCAAATGATTTTAGCGTGATGGATATCAAAGTTGGGTGCCAACTGAAGGTGGCTACTTTTGGAAATTGGGGGACAACGAAAGACCACAAAAATAAGAAAAATGTTTCCTATGATGACATCCACAACATGCTGGCTTATGGATTTGGGCTGTCTTGGTTATATGTTATTTGTCAAGATGAATGCGGAGAGGGTAAGGGTTGCAGTGTTATCAATGAATCCAGTAGTCAAATCCAATGTGATCAGCAAAACTGTCGTTATATCTACGGGAGTAACGGGACGAATGAAGTCACCTATGATTGCGGTGTTTCAGGATTATTAAGCATACTTAGCACTGTTATAGGTTACTGCATTGGTGTTTATAAAGGAATAATGCAAATTTTTGGCGTGAATAGAGCTCGGAGCTACGATGGAATTGATGTTGAGATCGGAAAAGTCACGGGAAGGTATGTCCTACCATACTTTGTTGTGAGATTTGTATTGGGTGTCGTAGCTTTCATTGTACTGTTAATCTACAAATGGGGAAGAAGACATACATCAAACTATGAAAATATCGAAGATTTTCTGCAAGAAAATACCTTCATGCCAATAAGGTACTCATACAAAGAAATAAAGCAGATGACTAGAGGCTTTAAGGAAAAGCTGGGCCAAGGTGGGTTTGGCATGGTGTATAAAGGAAAGCTACGAAGTGGGCCACTTGTAGCTGTAAAGATGTTGAGTAAATCAAACGCTAATGGGCAAGAATTCATAAGTGAAGTCGCAACCATAGGAAGGATACACCATGCCAATGTGGTTCGACTAATTGGATTTTGTGTTGAGGCATCAAAACGTGCTCTTGTTTATGAATTCATGCCCAATGGCTCTCTTGATAGACATATTTTCTCGAAAGAGGATAGTATTTCTTTATCTTACGAGCAAATATACGAGATTTCTCTTGGAGTGGCTCGTGGTATTGCTTATCTGCATCAAGGCTGTGACATGCAAATTTTGCATTTTGATATCAAGCCCCATAACATCCTTCTTGACGACAACTTTATCCCTAAGGTTTCAGACTTTGGCCTTGCAAAGCTTTATCCTATTGACAAAAGTATTGTGACTTTGACAGCAGCAAGGGGAACAATTGGATACATGGCTCCTGAATTATTCTACCATAATCTTGGGGGAGTATCTTACAAAGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGCAGGAGAAAAAACTTGAACAAAGAAGCAGAGCATTCAAGCGAGCTTTTCTTCCCTCTTTGGATTTATGATCAATTGAGCAGAGAAAATGAGTTGGAAATGGAAGATATTACCGAGGAAAAGAATGATGAGGCAAAGAAGATGTTCATAGTTGCATTATGGTGTATACAGTTAAAACCAAGCGATCGTCCCTCTATGAACAAAATAGTAGAGATGCTGGAAGGAGAACTTGAGAGTATTGATATGCCACCAAAACCTTCCCTATATCCACACGAAGTGATTCAAGAGAATCTCACTACCAACTCAGACCAAACGCTATCCGATGATTCTATTGGTTCTACAAGTTATCTTGAGGAAAGCTCTGTTAATACTTTAGAGAAGTATTCTGCTTCATAA 2133 0.4013 MERRAISSVATILLLFLQTCPASSVLPIHHCPASSCGNTPNISYPFRLSSDPPNCGDKRYELDCENNATMLNLFSGKYYVHEIDYKRYTIRVSDRGVVEDTTCSFIPRYFLYSLNFSQNIIGPGTDLLNLEPFDVPTIAYFNCTNPITDDPRYVKVDTTRCGSSGHIYTVLKDSSNDFSVMDIKVGCQLKVATFGNWGTTKDHKNKKNVSYDDIHNMLAYGFGLSWLYVICQDECGEGKGCSVINESSSQIQCDQQNCRYIYGSNGTNEVTYDCGVSGLLSILSTVIGYCIGVYKGIMQIFGVNRARSYDGIDVEIGKVTGRYVLPYFVVRFVLGVVAFIVLLIYKWGRRHTSNYENIEDFLQENTFMPIRYSYKEIKQMTRGFKEKLGQGGFGMVYKGKLRSGPLVAVKMLSKSNANGQEFISEVATIGRIHHANVVRLIGFCVEASKRALVYEFMPNGSLDRHIFSKEDSISLSYEQIYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPIDKSIVTLTAARGTIGYMAPELFYHNLGGVSYKADVYSFGMLLMEMASRRKNLNKEAEHSSELFFPLWIYDQLSRENELEMEDITEEKNDEAKKMFIVALWCIQLKPSDRPSMNKIVEMLEGELESIDMPPKPSLYPHEVIQENLTTNSDQTLSDDSIGSTSYLEESSVNTLEKYSAS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3891g00004 710 FunFam serine/threonine-protein kinase PBS1-like 350 456 - -
Gabi3891g00004 710 SMART serkin_6 382 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00004 710 Gene3D Transferase(Phosphotransferase) domain 1 457 661 - -
Gabi3891g00004 710 SUPERFAMILY Protein kinase-like (PK-like) 366 653 IPR011009 -
Gabi3891g00004 710 Gene3D Phosphorylase Kinase; domain 1 357 456 - -
Gabi3891g00004 710 FunFam PR5-like receptor kinase 457 664 - -
Gabi3891g00004 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Gabi3891g00004 710 CDD STKc_IRAK 388 654 - -
Gabi3891g00004 710 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Gabi3891g00004 710 Pfam Protein kinase domain 385 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00004 710 PANTHER RUST RESISTANCE KINASE LR10-RELATED 354 673 IPR045874 GO:0004672
Gabi3891g00004 710 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Gabi3891g00004 710 ProSiteProfiles Protein kinase domain profile. 382 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00004 710 Coils Coil 602 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3891g00004 Gabi-Chr3891 44210 49039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3891g00004 32 682 Receptor kinase-like Gene Family AT1G66910 35.364 1.17e-109 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3891g00004 Pkinase 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3891g00004 - - pvu:PHAVU_001G075800g 813.913