Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3891g00002 ATGACTAAAGGTTTTGAAGAAAAGCTGGGTCAAGGAGGGTTCGGTATGGTGTATAAAGGAAAGCTACGTAGTGGTCCATTTGTTGCCATAAAGATGTTGAATAAATCAAAGGCTAATGGGCAAGAATTCATCAGTGAAATCGCAACCATAGGAAGAATACACCATGCCAATGTGGTTCGACTAATTGGATTTTGTGTTGAGGCATCAAAACGTGCTCTTGTTTATGAATTCATGCCCAATGGCTCTCTTGATAGACATATTTTCTCTAAAGAGGATAGTATTTCTTTATCTTACGAGCAAATATACGAGATTTCTCTTGGAGTGGCTCGTGCTATTGCTTATCTGCATCAAGGTTGTGACGTGCAGATTTTACATTTTGATATCAAGCCCCATAACATCCTTCTTGACGAGAACTTTACCCCTAAGGTTTCAGACTTTGGCCTCGCAAAGCTTTATCCAATAGACAAAAGTATTGTGACTTTGACAGCAGCAAGGGGAACAATTGGATACATGGCCCCTGAATTATTCTACCATAATATTGGGGGAGTTTCGTACAAGGCTGACGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGCAGGAGAAAAAACTTGAACAAAGAAGCAGAGCATTCAAGTGAGCTTTTCTTTCCTCTTTGGATTCATGATCAATTGAGCAGAGAAAATGAGTTGGGAATGGAAGATATTACCGAGGAAAAGAATGATAAGGCAAAGAAGATGTTCGTAGTTGCGTTATGGTGTATACAGTTAAAACCAAGTGATCGTCCTTCAATGAACAAAGTAGTAGAGATGCTGGAAGGAGAAATTGAGGGCATTGATATGCCACCAAAACCTTCCCTATATCCAGATGAAATGATTCAAGAGGATATCACAACCAACTCAGACCAAACTCTATCAGATGATTCTATTGGTTCTACAAGTTATCTTGAGGAAAGTTATGTTCATACTTTATACAAGTATTCTGCTTCATAA 996 0.3876 MTKGFEEKLGQGGFGMVYKGKLRSGPFVAIKMLNKSKANGQEFISEIATIGRIHHANVVRLIGFCVEASKRALVYEFMPNGSLDRHIFSKEDSISLSYEQIYEISLGVARAIAYLHQGCDVQILHFDIKPHNILLDENFTPKVSDFGLAKLYPIDKSIVTLTAARGTIGYMAPELFYHNIGGVSYKADVYSFGMLLMEMASRRKNLNKEAEHSSELFFPLWIHDQLSRENELGMEDITEEKNDKAKKMFVVALWCIQLKPSDRPSMNKVVEMLEGEIEGIDMPPKPSLYPDEMIQEDITTNSDQTLSDDSIGSTSYLEESYVHTLYKYSAS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3891g00002 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Gabi3891g00002 331 ProSiteProfiles Protein kinase domain profile. 3 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00002 331 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00002 331 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Gabi3891g00002 331 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00002 331 SUPERFAMILY Protein kinase-like (PK-like) 6 274 IPR011009 -
Gabi3891g00002 331 PIRSF ILK 4 280 - -
Gabi3891g00002 331 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Gabi3891g00002 331 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Gabi3891g00002 331 CDD STKc_IRAK 9 275 - -
Gabi3891g00002 331 FunFam PR5-like receptor kinase 78 284 - -
Gabi3891g00002 331 Gene3D Transferase(Phosphotransferase) domain 1 78 286 - -
Gabi3891g00002 331 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 295 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3891g00002 Gabi-Chr3891 29429 30439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3891g00002 1 305 Receptor kinase-like Gene Family AT5G38280 48.553 2.93e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3891g00002 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3891g00002 - - mtr:120580205 501.901