Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3891g00001 ATGTTTGGAGTTGCACTTCTACTTGGGCTATTGATCTACAAATGGAGAAGAAGACATTTGTCAATGTATGAAAACATTGAAAACTTTTTGCTAGATAGCAATCTAAATCCCATTAGGTACGAATACAAAGAAATAAAGAGGATGACCGGAGGTTTCAAAGTGAAATTGGGTCAAGGAGGCTTTGGCTCTGTATACAAAGGAAAGCTCCGAAGTGGACCAGATATAGCAATAAAGATGTTAAGCAATTCCAATGCCAATGGACAAGATTTTATCAATGAAGTAGCTACCATCGGAAGAATACATCACGTGAATGTGGTGCGTCTTGTTGGATATTGTGTGGAAGGAAAAAAGCGTGCTCTAGTTTATGAATACATGCCTAATGGGTCATTGGATAAATACATTTTCTCTAAAGAAGGAAGTGTCCCTTTAAGTTATGAGAAGATATATGAAATATCTCTTGGAGTAGCTCGTGGGATTGCATATCTGCATCAAGGCTGTGATATGCAAATTCTACATTTTGATATCAAGCCTCATAATATTCTTCTTGATGACAACTTCATTCCAAAGGTGTCAGATTTTGGACTTGCAAAGCTATATCCTGTGAATGATAGCATTGTCACTTTAACTGCAGCAAGGGGAACTTTGGGTTACATGGCTCCAGAGTTGTTCTATAAAAATATAGGAGGAGTATCTTATAAGGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAGAAGGAAGAACTCAAATCCAAAGGCAGAGCATTCAAGTCAAGTTTACTTCCCATTTTGGATCTACGATCAATATGTAGAAGAGAAAGATATTGAAATGGAAGATGCCTCAGAGGAGGAAAAGACTCTAGCAAAAAAGATGTTCATAGTTGCACTTTGGTGTATACAGTTGAAACCGAGTGATCGTCCTTCCATGAACAAGGTAGTAGAGATGCTTGAAGGGGAAGTTGAAAGCCTTGAAATGCCTGCAAAGCCTTCTTTTTATCCAAATGAAACGATTGGACATGATGATGGAATGAACTCTGACCAAACATCGTGGAGTGATTCTACTTGTTCTGATATGTATATTGGTGAAACCATAACTAATAATTCATTGGAGAATGCCGCTTGA 1134 0.3783 MFGVALLLGLLIYKWRRRHLSMYENIENFLLDSNLNPIRYEYKEIKRMTGGFKVKLGQGGFGSVYKGKLRSGPDIAIKMLSNSNANGQDFINEVATIGRIHHVNVVRLVGYCVEGKKRALVYEYMPNGSLDKYIFSKEGSVPLSYEKIYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPVNDSIVTLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRKNSNPKAEHSSQVYFPFWIYDQYVEEKDIEMEDASEEEKTLAKKMFIVALWCIQLKPSDRPSMNKVVEMLEGEVESLEMPAKPSFYPNETIGHDDGMNSDQTSWSDSTCSDMYIGETITNNSLENAA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3891g00001 377 SMART serkin_6 50 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00001 377 Gene3D Transferase(Phosphotransferase) domain 1 125 332 - -
Gabi3891g00001 377 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Gabi3891g00001 377 SUPERFAMILY Protein kinase-like (PK-like) 35 321 IPR011009 -
Gabi3891g00001 377 CDD STKc_IRAK 56 322 - -
Gabi3891g00001 377 Coils Coil 274 294 - -
Gabi3891g00001 377 Pfam Protein kinase domain 54 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00001 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Gabi3891g00001 377 Gene3D Phosphorylase Kinase; domain 1 27 124 - -
Gabi3891g00001 377 ProSiteProfiles Protein kinase domain profile. 50 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3891g00001 377 FunFam serine/threonine-protein kinase PBS1-like 21 124 - -
Gabi3891g00001 377 FunFam PR5-like receptor kinase 125 332 - -
Gabi3891g00001 377 PANTHER RUST RESISTANCE KINASE LR10-RELATED 23 340 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3891g00001 Gabi-Chr3891 7451 8614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3891g00001 39 353 Receptor kinase-like Gene Family AT5G38280 50.774 1.50e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3891g00001 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3891g00001 - - lja:Lj0g3v0275229.4 647.121