Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi388g00002 ATGGGTTCAACTGGGGGGTTTCGGAGATGTTTAGCATATTCAATTAGTTTGAAGAAATTGACAAGGATTAAGGATATTCCTCAAGCTCATTGTGATTTCTCACCTGACCAATCTTCCTGCACTGCACTCTTCGATTTGCTTGTGGATGTTGGGGCCTGCAAAGTAGCAAAATCCTTGCTTGATTGCTCAGGTTTTACTCCTGAGCCTGCCTCTTTGGAGTGTTACATTTGGTGTCTCTGCAGTGAGGGAATGGTTGAGGATGCACTTGATATGTTTCTTATATTGAGAAAGGTTGGATTTTCTCCATCGGTGGCAACTTGGAAAGCATCTTTGTTAGGTTGTTTGAAGGTTGGTAGGACTGATCTGGTTTGGACATTGTATGAGCAAATGATGGAAATAGGAAGAGAGGGCATAGGGAGCAATTCTTGTGACTACCACAAGTTGGATAAAGAAGGTGTGTTGAAGAGGGAAATCAAAGATTTAAAATTCTTCTTCATGATGGGTCACTCTCAAAATGTAACTATTGAAGACATTGATGCAAGTGAAAGTTTAGTATGTGTAGATGATATTGTTGATTTGGAGAAAGACACAAATGAATTTAGGGAAGACGATCTGAGTGAAATCATGGCAATCAAAGATGGTGAATGTGAGGAAGATGATGCATATGAAATTGTGGGACATGTTGATACTGAATTAATGAAGACCCCTATTTTAACTAGAGTTTTTGAGACATCAGAAGAAGCTTATGCTTTTTATAATGCTTACGCAAAAGGTAAGGGGTTCAGAATACGTAAGCAATACCATAACAAGAATGCAATTACAAAAGAAGTATATAGGTGGAATTATGTGTGCTCGAAGCAAGGTGTCAAGAGACTTGATGATAAAAGAGTTGATGTTGACAATGTCAAAAGGCGAAGGGATTCAAGGACTAATTGTTTGGCGATGTTACAAGTAAAGTTGGTGGATGGCCTATGGAAAGTGGAGAAGTTCAATGATACACACAATCATCCATTGATTAACACTCCAACAAAGGTGAAGAAGTTTCTTTCTCAAAATGAATTTAGACGCTCAGACTTGACAAAATCTGTTGTTTCTAAGCTTTATCAAGAGGGTTTAACATCTTCAAAAATCTCAAAGGTTGTGAGTGCTATGGACAAAGAGGTTAACCTTACTCCTGTTCAAATAAACAATATTATATCTAGCCAACGAAGGAATAATGTGGGGCGAGAATGCCAGGGCATCATCAAACACTTTAAGAGGAAGTCCATGGTTGATGGAGCTTTTTATTTTGATATGCATTTGGCAGAAGATGGAACACTAAGAAGCATATTCTGGGCAGATGGTAGGTCAAGAGCTGCATATGCTCATTTTGGTGAAGTCCTTGTATTTGATGTGACTTACAAAACAAACAAGTTCAAGTTTCCTTTTGCCCCTTTTGTGGGGGTTAATCACCATGGGCAAACAACTTTATTTGCTGCCGCTTTGTTAGAAGATGAAACGGAGGCAACATTTACATGGTTGTTTGAACAATTTCGAATATGTATGTTTGACAAGTCTCCTGTTGCTATTATCACTGATCAAGACAAAGCTATGGGAAAAGCAATTGCCAAGATATTTCCAGCAGCACGACATCGTTTTTGCGCATGGCATATAAAGAAACATGTTATGGAGCATAGTCAAGCACTACGTGCACAATTTAAAGATAGTTTTCATGTTGACTTTCGTGCGTGGTATAAAAGTCGAAACATTGATGAGTTTGAGTGCAAATGGGAAATATTGAGGAGTAAATATGTTACTAAAGAAAATAGCTGGCTGGCTAACATGTATGCTTCACGTCATCATTGGGCAAAGGCATACTTGAAAGATACATTTTTTGCCGGAATGACCACAAGTGGCCGAAGTGAGAGCATCAATGCATTTTTTGATGGATATGTCAACTCTAACACAATGTTAAATGACTTTGTTATCCAATATGACAAAGCAATCAAATCTAGGAGGGATGCAGAGGAAGATGAGGATTTCAAAACTAGAAATACAAAAGCAGTTTTGGAGACTAATCATCCTATTGAAGCAATAGCTGGAGAATGGTACACAAGAAAATTATTTGAAATCTTCAAAAAAGAGTGGAAGGATGCCATGCATAATTGTTTTCATGAAAAGATTGCAATGAAGGAAAACCTCATCACATATCGAGTGGGATCTCCTGAAGTTGAAAAAGAATGGTGGGCAATTGTAGAGTATCATTTGACGGAAAGCTTCACAGCTCATTGTTCGTGTGCAAAGTTTGAGACTATGGGGATTTTGTGCAAACATATTCTATACATCATGAAGAAGAAACAAATCATGACCCTTCCTGAAAAATATATCTTGTCTAGATGGACCATGAATGCAAGCTATAAGGCTGAAAATCTTATATCTATTCATGATGAAACAAATACTAATGAAATTAGTGCATTATCTTTGTGGTCGATTCAGTTGAAGTGCACTATGGCTATTTCTGAAGCAAGAGATTCTACTTTTGAGATTAGAAGGTTTGATGCTATGGTTGCTGAATTTCTACAACAACAGTTGGAAAGAAAAAGAAAGAGAGGTGAAGATGAACTAAATGCCCAAAAGATTCCACAAATATTACTCATTGATGATGTGCGTGATCCCACTCAACCTGTCAAAACTAAGGGTCGTCCAAGGATTGCTTCACGAATAAAATCAAGCATGGAGTTGTCAACAAAACAACAAAAATCTTGTAGTTATTGTCGAATGAAGGGTCATAATAAATCAGGTTGTCAGATGCAAAAGATGGATGTTGCAAGAGAGAAGCAAAAAGAACAGTAG 2832 0.3764 MGSTGGFRRCLAYSISLKKLTRIKDIPQAHCDFSPDQSSCTALFDLLVDVGACKVAKSLLDCSGFTPEPASLECYIWCLCSEGMVEDALDMFLILRKVGFSPSVATWKASLLGCLKVGRTDLVWTLYEQMMEIGREGIGSNSCDYHKLDKEGVLKREIKDLKFFFMMGHSQNVTIEDIDASESLVCVDDIVDLEKDTNEFREDDLSEIMAIKDGECEEDDAYEIVGHVDTELMKTPILTRVFETSEEAYAFYNAYAKGKGFRIRKQYHNKNAITKEVYRWNYVCSKQGVKRLDDKRVDVDNVKRRRDSRTNCLAMLQVKLVDGLWKVEKFNDTHNHPLINTPTKVKKFLSQNEFRRSDLTKSVVSKLYQEGLTSSKISKVVSAMDKEVNLTPVQINNIISSQRRNNVGRECQGIIKHFKRKSMVDGAFYFDMHLAEDGTLRSIFWADGRSRAAYAHFGEVLVFDVTYKTNKFKFPFAPFVGVNHHGQTTLFAAALLEDETEATFTWLFEQFRICMFDKSPVAIITDQDKAMGKAIAKIFPAARHRFCAWHIKKHVMEHSQALRAQFKDSFHVDFRAWYKSRNIDEFECKWEILRSKYVTKENSWLANMYASRHHWAKAYLKDTFFAGMTTSGRSESINAFFDGYVNSNTMLNDFVIQYDKAIKSRRDAEEDEDFKTRNTKAVLETNHPIEAIAGEWYTRKLFEIFKKEWKDAMHNCFHEKIAMKENLITYRVGSPEVEKEWWAIVEYHLTESFTAHCSCAKFETMGILCKHILYIMKKKQIMTLPEKYILSRWTMNASYKAENLISIHDETNTNEISALSLWSIQLKCTMAISEARDSTFEIRRFDAMVAEFLQQQLERKRKRGEDELNAQKIPQILLIDDVRDPTQPVKTKGRPRIASRIKSSMELSTKQQKSCSYCRMKGHNKSGCQMQKMDVAREKQKEQ 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi388g00002 943 ProSiteProfiles Zinc finger SWIM-type profile. 747 780 IPR007527 GO:0008270
Gabi388g00002 943 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 231 825 IPR031052 GO:0006355
Gabi388g00002 943 Pfam MULE transposase domain 460 553 IPR018289 -
Gabi388g00002 943 MobiDBLite consensus disorder prediction 923 943 - -
Gabi388g00002 943 Gene3D Tetratricopeptide repeat domain 17 179 IPR011990 GO:0005515
Gabi388g00002 943 Pfam SWIM zinc finger 754 773 IPR007527 GO:0008270
Gabi388g00002 943 Pfam FAR1 DNA-binding domain 251 339 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi388g00002 Gabi-Chr388 70821 77292 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi388g00002 MULE 7.7e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi388g00002 - - lsv:128127215 720.694