Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00068 ATGGAAGAGGTCTTGAATTCTATTAAGCATGCTTGTGAATTGGCTCGAAACCTTGAAACAGAACTAACCAACATGGCCAACCAGCCTAATATGCTATCCTTGTCCATTGATGAGGTAGTGAAGACATTTGGTGATGCCAAAGAGAGGCTATTGATGATGATGTCCCAACAAAACCTAACGATAACAGCTTCTTCTTCTTCTTCTTTTCCTCCAATGCTGCTTCATGAGCATGCTCAGATAGGTGCAAGTCCAACTTCAATGCAGGGATTGCTCGGCTCTGGAAGTTATGCACAGGCAATGGTGCAGCAACAACCGTTTGATGTGAGGACTTTGCTTGAAACTAAGATTATAAGTGGTGGTGATCTTCAGCAGTTAAGGTATAGGGGCACCCTGCAGATTGGTGAAATGGGTGGGAGGGATCTGGAAGGTTCAGCTGAGAGATCAAAGGGGTCTGAAGGAGAAATGCAAGGAATAGAAGCATCGCCCTCACGACAACGAAAAAGCAGCAGGAAGAATGATCCGGAGAAGAAAACAATGATGATTCCTGCACCACTGGTTGGAAACACAGAGATGCCACGGGAGGATGGCTTCACTTGGAGAAAATATGGCCAGAAAGAGATACTTGGCAAAAAATACCCAAGGGGCTACTTCAGATGCACACACCAGAAATTATATGGGTGCCCAGCAAAGAAACAAGTACAAAGACTTAATGACAATCCAAACATATTTGAAGTAACATACAGAGGAGAACATACCTGCTACATGTCCTCTACAGCACCATCATCATTTCCACAAACACAACTACTAATGGATATCTCAAACGACATGAATCAAACTACCATTTCCCCACGGTTGTCTACATCATCAACTTCGGTTTCCGCGTGGCTGTCGTCGGCGAACCTCAACCTCCAGGGTGGCGGAGACGGCGGCGGCAGCAGCAGTGGTGGTGGTGCTGGGCCCTCTACTTCAAAATATGTTGCTGATTATCCGGTAGTGGATATGGCTGATGCTATGTTCAACTCGGGTATTAGTAGCGGTCACAGTATGGAATCTCTCTTTCCTCCCGCTGAAGATAAATGGGAACAAGGTGAGAAGAAAAACTGA 1104 0.4565 MEEVLNSIKHACELARNLETELTNMANQPNMLSLSIDEVVKTFGDAKERLLMMMSQQNLTITASSSSSFPPMLLHEHAQIGASPTSMQGLLGSGSYAQAMVQQQPFDVRTLLETKIISGGDLQQLRYRGTLQIGEMGGRDLEGSAERSKGSEGEMQGIEASPSRQRKSSRKNDPEKKTMMIPAPLVGNTEMPREDGFTWRKYGQKEILGKKYPRGYFRCTHQKLYGCPAKKQVQRLNDNPNIFEVTYRGEHTCYMSSTAPSSFPQTQLLMDISNDMNQTTISPRLSTSSTSVSAWLSSANLNLQGGGDGGGSSSGGGAGPSTSKYVADYPVVDMADAMFNSGISSGHSMESLFPPAEDKWEQGEKKN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00068 367 Gene3D WRKY domain 186 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3887g00068 367 SMART WRKY_cls 193 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3887g00068 367 SUPERFAMILY WRKY DNA-binding domain 191 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3887g00068 367 ProSiteProfiles WRKY domain profile. 188 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3887g00068 367 Pfam WRKY DNA -binding domain 194 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3887g00068 367 Coils Coil 1 28 - -
Gabi3887g00068 367 MobiDBLite consensus disorder prediction 136 179 - -
Gabi3887g00068 367 MobiDBLite consensus disorder prediction 346 367 - -
Gabi3887g00068 367 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 263 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00068 Gabi-Chr3887 525284 529239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00068 1 354 WRKY Transcription Factor Family AT2G40740 36.141 1.53e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3887g00068 WRKY 2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00068 - - mtr:11424132 363.999