Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00065 ATGAATATCCTTTGCCCTGAAAGTGTCTCAGCCAAGGAGAAAAGAGTGATAATGAGAGAGCTTCTTCAGGGTCAGAAATCTGCTACACAGCTCAAGGTTCTGCTTGAGAAACCCTTTGAGGAAGATGGGTCTTTCTCCTCTGAAGAACTCGTGACCAATGTACTGAGATCTTTCACAGAAGCTCTTTCCATCATAACTTCTTCCTCAGAACCCGGTGGTGGTGGCGAGGTAGCTCATCAGAATTTGCTGAATTCCGGCGAAGACGGGTCTCCGTTAACGTCCGGAGATTCCGTTGAAAGTAGGAAGAGATCCTCGCCGGCCAGAAAGGGTGGAAGAGGTTTCTACCAAAGAAGGAAGGGTGCACAGACAAGAACCACACTCTCCCACATCACCGATGATAATCATTCATGGAGGAAGTACGGACAAAAGGAAATCCATAATTCTAAATTCCCTAGGAGTTACTTCAGGTGCAGTCGCAAGTATGATCAAGGTTGCAAAGCAACCAAACAGGTGCAGCTGACACAAGAGAATCCTGATATGTACCATATTATGTACATTGGCATTCACACATGTAAAGCCACCCCCAATGCTACACATTTGGTCACAGATTCTAGTACTTGGGAATCATTTATTCTGAATTCTGATCCTGACTCAAAGATACCAAATGAACAGGATCACCATATTAGCTCCCCAAGCCTAACTATAAAACAAGAATGTCCCAAAGAAAACAATTCGAGTTATGTTACGGATCGCAAGTTGGATCCTAGCCTGTTGTCCGATTTGAAGGATTCTGAACCCTCCAAGCCTGTCATATATGCCTTTGTAAATGGAATCTGTTAA 840 0.4405 MNILCPESVSAKEKRVIMRELLQGQKSATQLKVLLEKPFEEDGSFSSEELVTNVLRSFTEALSIITSSSEPGGGGEVAHQNLLNSGEDGSPLTSGDSVESRKRSSPARKGGRGFYQRRKGAQTRTTLSHITDDNHSWRKYGQKEIHNSKFPRSYFRCSRKYDQGCKATKQVQLTQENPDMYHIMYIGIHTCKATPNATHLVTDSSTWESFILNSDPDSKIPNEQDHHISSPSLTIKQECPKENNSSYVTDRKLDPSLLSDLKDSEPSKPVIYAFVNGIC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00065 279 ProSiteProfiles WRKY domain profile. 126 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3887g00065 279 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3887g00065 279 Pfam WRKY DNA -binding domain 132 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3887g00065 279 MobiDBLite consensus disorder prediction 66 126 - -
Gabi3887g00065 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 218 IPR044810 GO:0003700
Gabi3887g00065 279 SUPERFAMILY WRKY DNA-binding domain 129 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3887g00065 279 MobiDBLite consensus disorder prediction 83 100 - -
Gabi3887g00065 279 Gene3D WRKY domain 117 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00065 Gabi-Chr3887 485019 487011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00065 13 191 WRKY Transcription Factor Family AT3G56400 46.448 3.10e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3887g00065 WRKY 3.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00065 - - gmx:100796071 303.908