Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00062 ATGCTGAGAAGCAGCAGGAGTGTTATACCTCCTCCTCTGCCACTGCTGTCCCTGAGTACGAGGATGCTGTCGCCGCCGTCGTCTTCCGCCACCTCCGAAACCACACAACCCTCTTCTCGAAACCCCAAATCCTCATTCCACCACCTTCCACTCTTCTCCAACTGTCACACTCTTCAAAGCATGACGCTTTCCAAGTGCTTCTCCCACTCTGAGCCCACAAACCCCATCCCCATCTCGGGCATGCCCGAATCCGATGGCCTTCACTCTCTTGTTGTGGTTTCCTTCTACAAGTTCGCTGATTTCCCTGACCATGCCCACATGCGAAAGCCCTTGAAGCAACTCTGTCAACAACTGCGTGTTTCAGGTGGTATTATTCTTGCGCCTGAAGGAATCAATGGCAGCATATGTGGCACTAGGGAGTCGGTGGAGACAGTTCTTGCATTTGTACAGAGCGATGATCGTCTTAAGGGGCTAAGACAAGTGGAATCGCCTGTCAGTCCTGAGGAGGAAGCCATCCATCATGGACACAGTGCCAGTTCTCCTCTTGCTGCAGGGGAAGATGCGCCCTTCCGATGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTCACTCTCGGAATGCCTACTGTGTCACCCGTTGAAAGGGTTGGAAAGTATGTCGGCCCAAAAGATTGGAATGCTTTGATTAGTGATCCAGATACAGTGGTAATTGATGTGCGAAATAACTATGAAACCAGAATAGGAAAGTTTAAGGGAGCAGTTGATCCTTGTACTATGTCATTTCGTGAATTCCCATCTTGGGCGGAGGAACATTTCCAGCTTACCAGAAAAGATGGTGAGCAACCAAAAGTTGAGGTAAACAATTCAGTCCAAAGTGCTGAAAAAGAGAGAGAGAATCCAAAGCAACATATGCCACAACGTGTTGCAATGTATTGCACTGGAGGTATTCGATGTGAGAAAGCATCAAGTCTACTTCTCAGCAAAGGATTCAAAGAGGTTTATCACCTGGAAGGTGGGATTCTGAAATATCTTGAGGAGGTTCCAGAGACACAGAGCCTGTGGGAGGGAGAGTGCTTTGTTTTTGACAAGCGAGTCTCTGTGGAGCATGGTTTGGTGCAAGGAAATTTCAAGCTCTGCTATGGTTGTAAGCAGCCTGTGAGTGATGCTGACATGCAAGCCCCAGAATATGAATATGGAGTCTCTTGTCCTCACTGTTTTTCACTGAAATCAGATGAAGAGAAAGAGAGAGCTCGTGCTCGACAAAGACAATTTGAGAGATGGGGAATCATAGGTGGTCCTGATAAGGGTCGCAGGTCAACATGTGACCCAGATAGTGCTAGCCTGAAACCAATCAAGCTTTCACATTCTGTTTAA 1377 0.4771 MLRSSRSVIPPPLPLLSLSTRMLSPPSSSATSETTQPSSRNPKSSFHHLPLFSNCHTLQSMTLSKCFSHSEPTNPIPISGMPESDGLHSLVVVSFYKFADFPDHAHMRKPLKQLCQQLRVSGGIILAPEGINGSICGTRESVETVLAFVQSDDRLKGLRQVESPVSPEEEAIHHGHSASSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPVERVGKYVGPKDWNALISDPDTVVIDVRNNYETRIGKFKGAVDPCTMSFREFPSWAEEHFQLTRKDGEQPKVEVNNSVQSAEKERENPKQHMPQRVAMYCTGGIRCEKASSLLLSKGFKEVYHLEGGILKYLEEVPETQSLWEGECFVFDKRVSVEHGLVQGNFKLCYGCKQPVSDADMQAPEYEYGVSCPHCFSLKSDEEKERARARQRQFERWGIIGGPDKGRRSTCDPDSASLKPIKLSHSV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00062 458 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 200 379 IPR036873 -
Gabi3887g00062 458 Gene3D - 205 388 IPR036873 -
Gabi3887g00062 458 SMART rhod_4 221 350 IPR001763 -
Gabi3887g00062 458 CDD RHOD_YceA 218 346 - -
Gabi3887g00062 458 MobiDBLite consensus disorder prediction 430 458 - -
Gabi3887g00062 458 MobiDBLite consensus disorder prediction 163 183 - -
Gabi3887g00062 458 Pfam UPF0176 acylphosphatase like domain 91 203 IPR040503 -
Gabi3887g00062 458 MobiDBLite consensus disorder prediction 1 44 - -
Gabi3887g00062 458 Gene3D - 81 204 - -
Gabi3887g00062 458 MobiDBLite consensus disorder prediction 279 304 - -
Gabi3887g00062 458 MobiDBLite consensus disorder prediction 20 44 - -
Gabi3887g00062 458 Pfam Rhodanese-like domain 224 346 IPR001763 -
Gabi3887g00062 458 Hamap tRNA uridine(34) hydroxylase [trhO]. 88 390 IPR020936 -
Gabi3887g00062 458 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 87 419 IPR020936 -
Gabi3887g00062 458 ProSiteProfiles Rhodanese domain profile. 231 353 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00062 Gabi-Chr3887 449230 453120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00062 62 446 Sulfurtransferasese or Rhodanese AT2G40760 74.870 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00062 - - gmx:100784854 705.286