Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00061 ATGATGAATATCATGTCTTGGCTACGTCCAGAAACAATGACTTCAGAAGTTAGGTATGGGTTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAGACAGAGAAGGGAGATGACATTTGCTACACCAGGAAATATGCAAGGTTTGATCCTTCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGCGCCAATGCTTGATGATGACATACCTGAGTTACTTCCTGAACTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAATGGAAGAAAGTCAGAGTGAAAGAGAAAGAAATCAGTTTCTTTCTCCATTAAGTGTGCCTGTGGATTTTCTTGACACAAGTTCTAAAATGTTTTTCAATCCATTCAATGGAAATATTTCGTTGTGCCCAGAGACTTCTTCGCCTTGTGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGTATCTTTGCTCACCGGAGATCAGCATCTGGAAGTGAGATAATGATTGATTCAGTGCCTCAAGTTAACGGGGACCAAAACCTAACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGTGAAAGTCTCAAATATCAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCTGATTGTGTTGGTTATTCACCTAAAGGTAAATCACTGAAATCAAAACAAGGATGTGAAAACAAGACATGTAAAACCACCATATCTGTGAGGGATGGGGAATATGCATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCGGTTGCCTCTGGTGCCACTCTCATTGTTTGTCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTACACGTCATACACTTCCAGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGACACATCTTTATCCAATACATCTGTGATGGATATCAGCGATCTTGCCAGTGCTGACATTGTAATAACTACGTATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTTATAGACATGAAGGTGATCGTCACTTTCTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTTTGGATGAGGCTCAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTGAGACTCCATTCGAAGCATCATTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACCTCTATGGACTTTTAAGATTTCTTAAAGCTAGTCCTTTCAATGAAAACAGGTGGTGGACTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATAAGAGCTATGGAATTTACACACAGATTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGTGGAATGCCTCTCTTGGCTTACACTCTCATCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATTCCCATGAAGTTATTGAAAATCTGAGAAATGATATTCTGAATAGAAGTATCCCAGGTTCTGTATCATTGAATGGTTCCTCTGATCCATTAATCACTCACACAGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTACGGTCCCTGCAGCAGTCGCCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGTAAAACCAAGATAGAAGGTGAGGAAGCTCTTAGGAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTACAATACAAAAGGATTTTTCTCAAGCTGCATTGCTCTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACTGGTTGCAAACTTTGCTTTAATGTTGCTCTCCAAAGGAAAGCAGTTCTCTGGAACTTCTGCAGTTAAGATGACAAGAAAGCATTTTATTGAAAAGGTTGATCATTGTCAGGTGAAGAGGCAAAAAATAAATGGATGTGATAACATGAATTTAACAGCGGCTTCTGTAGAACCATCAAATGTTGCATCTAGCCCATCAGAAAATAGCTTAAATGAGGATTGGGAATTTGATAGTGTATCAGCCAGTTCTGTCAAATCTCTGATAGCAGAATGTGAAGATTTAAAACAGAAATACTTATCCGTATTCAGTTCAAAGCTATCTGCAGCTCAGCAGGAGTTTCAAAATTCTTACATCCAGGTTTGTAATGCATATCGTGACAGCAAAACAGATCAAAATACATTTTGGTGGTTAGAAGCGTTTGATCATGCTGAGCAGAACAAGGATTTCTCGACTGAGTTGCTTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTTCTCGTTTCCGGAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCAGCTAGAGGCCTCTAGGAAAGTGCTATTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGCGTGGGTAAATGCCAAAATTGTCAACCTAATTGTGATGGTCCCCCATGTGTTCTGTGTGAACTAGATGAATTGTTTCAGGAATATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCGGCTGAGGCAGTAGATTTTCAGAAGAAAAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCATAGTTCAACCGGATCTGATATTGGTTATGAAGAATCAAAAAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAAAGCTATTGCAAGGTTCGGTTGGGAAGAGACAGGGTTTCAGCTGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTTCCCATGATGAAATAATGATGGCGATTTCCCGTTTGCACCTAAGGGCAAATGAAAATGATCAATCTCTTGATGCTCTAGGTGAAAATGAATTATATGCGGCTAGCTCAAGCTTTTCCCACGATAAGTTTATGTCATTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATTGGAAAGTCCAGATAGTTCTTCTTTCTCTCAAGAGACAACTACAATGTCAAACTCTACTGAAGAGAAGGGTGCACTCATATCCAAAGCTGATGATCAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCAATCAGAAAATGGTATTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAGCATAGCAAGATTCATAATTGGGTTATGTGCCCTACATGTCGACAGCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGTACAGAATGAATCTTCCAATTCTTCAATGCTGCATACAATTGACAGCTGTGAAAAATGTGAAGCATCCATGAGTGTTAAAGGCTCATATGGAACTAAGATTGAGGCAATCACAAGAAGAATCTTGTGGGTAAAGGCTACCGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCATTTGCTGCCAATAACATCACCTATATTCGGATGAAGGGAGGCAGGAAAGCACATGTTGCCATCAGTCAATTTAGAGAAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTTAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACTCAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGGAGCAGTCATTCATTCATTAGTGGCAACACAAAAAATCAAGACCAACCTGTTTTAACCCTGAAGGATGTCGAATCCTTACTGGCAAGAGCACCTCTAACGATGCCAGAAAGTGATGAAAATCCTAATCCTAATTCAAATACAAATCTAAGTCACTTGCCACCATCAATGGCCGCGGCTATTGCTGCTGAGAGGAGACTTAATGAGCAGAGGACATGA 4368 0.4029 MMNIMSWLRPETMTSEVRYGFGSCMKMEVDPQTEKGDDICYTRKYARFDPSGFYEAIKPSKAAPMLDDDIPELLPELRPYQRRAAFWMVEREKAMEESQSERERNQFLSPLSVPVDFLDTSSKMFFNPFNGNISLCPETSSPCVFGGILADEMGLGKTVELLACIFAHRRSASGSEIMIDSVPQVNGDQNLTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCENKTCKTTISVRDGEYACQMCSELIQATESPVASGATLIVCPAPILPQWHDEITRHTLPGSLKTCVYEGVRDTSLSNTSVMDISDLASADIVITTYDVLKEDLSHDSYRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNENRWWTEVIRDPYEKGDIRAMEFTHRFFKQIMWRSSKEHVADELDLPSQVECLSWLTLSSVEEHFYQRQHETCVRDSHEVIENLRNDILNRSIPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRLVVALNGLAAIATIQKDFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLVANFALMLLSKGKQFSGTSAVKMTRKHFIEKVDHCQVKRQKINGCDNMNLTAASVEPSNVASSPSENSLNEDWEFDSVSASSVKSLIAECEDLKQKYLSVFSSKLSAAQQEFQNSYIQVCNAYRDSKTDQNTFWWLEAFDHAEQNKDFSTELLRKIEEAISGTSNNSKSSRIASRFRSISSLKYQIQTGLDQLEASRKVLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDELFQEYEARLFVLKNERGGIISSAEAVDFQKKNFALNHFLSKLSQSNHSSTGSDIGYEESKKRNVGQRVVVSRSASELELILGVIKSYCKVRLGRDRVSAATKHLHIFEGMRKEFGHARSLALAQAQYLRSHDEIMMAISRLHLRANENDQSLDALGENELYAASSSFSHDKFMSLTLLSQIKGKLRYLKGLVQSKQKLPLESPDSSSFSQETTTMSNSTEEKGALISKADDQTCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQHSKIHNWVMCPTCRQHTDFGNIAYAVDVQNESSNSSMLHTIDSCEKCEASMSVKGSYGTKIEAITRRILWVKATDHKAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFREKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDSVEESIYKLNRSRSSHSFISGNTKNQDQPVLTLKDVESLLARAPLTMPESDENPNPNSNTNLSHLPPSMAAAIAAERRLNEQRT 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00061 1455 SMART ultradead3 73 449 IPR014001 -
Gabi3887g00061 1455 Gene3D - 269 497 IPR038718 -
Gabi3887g00061 1455 Gene3D - 141 185 IPR038718 -
Gabi3887g00061 1455 MobiDBLite consensus disorder prediction 1421 1437 - -
Gabi3887g00061 1455 Gene3D - 1207 1447 IPR027417 -
Gabi3887g00061 1455 MobiDBLite consensus disorder prediction 1417 1455 - -
Gabi3887g00061 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1126 1206 IPR013083 -
Gabi3887g00061 1455 SMART helicmild6 1270 1357 IPR001650 -
Gabi3887g00061 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 473 IPR027417 -
Gabi3887g00061 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 268 IPR013083 -
Gabi3887g00061 1455 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 438 IPR014001 -
Gabi3887g00061 1455 SUPERFAMILY RING/U-box 1139 1197 - -
Gabi3887g00061 1455 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1242 1408 IPR001650 -
Gabi3887g00061 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 1415 IPR027417 -
Gabi3887g00061 1455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1454 - -
Gabi3887g00061 1455 SMART ring_2 1145 1192 IPR001841 -
Gabi3887g00061 1455 CDD PHD_TCF19_like 204 250 - -
Gabi3887g00061 1455 SMART PHD_3 202 270 IPR001965 -
Gabi3887g00061 1455 ProSitePatterns Zinc finger PHD-type signature. 203 269 IPR019786 -
Gabi3887g00061 1455 SUPERFAMILY FYVE/PHD zinc finger 199 271 IPR011011 -
Gabi3887g00061 1455 Coils Coil 1443 1455 - -
Gabi3887g00061 1455 CDD SF2_C_SNF 1236 1368 - -
Gabi3887g00061 1455 Pfam Helicase conserved C-terminal domain 1239 1357 IPR001650 -
Gabi3887g00061 1455 ProSiteProfiles Zinc finger RING-type profile. 1145 1193 IPR001841 -
Gabi3887g00061 1455 Pfam SNF2-related domain 80 572 IPR000330 GO:0005524|GO:0140658
Gabi3887g00061 1455 CDD DEXQc_SHPRH 77 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00061 Gabi-Chr3887 419808 445557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00061 277 570 RAD5 or RAD16-like Gene Family AT5G22750 31.773 1.62e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3887g00061 SNF2_N 4e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00061 K15710 - gmx:100776659 2521.5