Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00060 ATGGGTAGACGAAAAAGTAAACCACATCGATCAGGTGGGATAATATTAGAAACAAATGCTACTGCTGAAACAGATTTGGATAAACAGAATGTTGTAGAAGCAGGGGAAGAAAAGAAGAATGATTCTGGTGACATTGATAAACCTTATTTTGTTGACGTTGACCGGTCTGGTTGGTTGTCCAGTGAACACCTTGATATTTCTGAAGTAGTTTTAAGGGATTTAAATTTGAGAGAAGGTTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCCTCACTATTCATTAAGATTTCGGGTGTGTAATGCCAATAATGTTCTTGGTCGAATAGGCCATTGGCCTGTTTTACCATATACTGATATTCATCTAGAGTTTGTCAAAAGAGTTACAGTTGAGCATATGGAAACTTGTACAGTGTTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTATTCACTTGGTAAGTTTGAAATTTGTTACAGTAAGGGCAATTTGTGGGATTAGGCTTTCTGAGGACATTCCCTCCCTCAGAGTAAGGGTAGAGGTACTAAAGAGTGCTTTTGATGCATGCGAGTCACTTCTTGATGGTTCTAGACAACTATGGAAAAAGAGTATGATGAATATCATGTCTTGGCTACGTCCAGAAACAATGACTTCAGAAGTTAGGTATGGGTTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAGACAGAGAAGGGAGATGACATTTGCTACACCAGGAAATATGCAAGGTTTGATCCTTCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGCGCCAATGCTTGATGATGACATACCTGAGTTACTTCCTGAACTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAATGGAAGAAAGTCAGAGTGAAAGAGAAAGAAATCAGTTTCTTTCTCCATTAAGTGTGCCTGTGGATTTTCTTGACACAAGTTCTAAAATGTTTTTCAATCCATTCAATGGAAATATTTCGTTGTGCCCAGAGACTTCTTCGCCTTGTGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGTATCTTTGCTCACCGGAGATCAGCATCTGGAAGTGAGATAATGATTGATTCAGTGCCTCAAGTTAACGGGGACCAAAACCTAACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGTGAAAGTCTCAAATATCAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCTGATTGTGTTGGTTATTCACCTAAAGGTAAATCACTGAAATCAAAACAAGGATGTGAAAACAAGACATGTAAAACCACCATATCTGTGAGGGATGGGGAATATGCATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCGGTTGCCTCTGGTGCCACTCTCATTGTTTGTCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTACACGTCATACACTTCCAGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGACACATCTTTATCCAATACATCTGTGATGGATATCAGCGATCTTGCCAGTGCTGACATTGTAATAACTACGTATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTTATAGACATGAAGGTGATCGTCACTTTCTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTTTGGATGAGGCTCAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTGAGACTCCATTCGAAGCATCATTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACCTCTATGGACTTTTAAGATTTCTTAAAGCTAGTCCTTTCAATGAAAACAGGTGGTGGACTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATAAGAGCTATGGAATTTACACACAGATTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGTGGAATGCCTCTCTTGGCTTACACTCTCATCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATTCCCATGAAGTTATTGAAAATCTGAGAAATGATATTCTGAATAGAAGTATCCCAGGTTCTGTATCATTGAATGGTTCCTCTGATCCATTAATCACTCACACAGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTACGGTCCCTGCAGCAGTCGCCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGTAAAACCAAGATAGAAGGTGAGGAAGCTCTTAGGAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTACAATACAAAAGGATTTTTCTCAAGCTGCATTGCTCTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACTGGTTGCAAACTTTGCTTTAATGTTGCTCTCCAAAGGAAAGCAGTTCTCTGGAACTTCTGCAGTTAAGATGACAAGAAAGCATTTTATTGAAAAGGTTGATCATTGTCAGGTGAAGAGGCAAAAAATAAATGGATGTGATAACATGAATTTAACAGCGGCTTCTGTAGAACCATCAAATGTTGCATCTAGCCCATCAGAAAATAGCTTAAATGAGGATTGGGAATTTGATAGTGTATCAGCCAGTTCTGTCAAATCTCTGATAGCAGAATGTGAAGATTTAAAACAGAAATACTTATCCGTATTCAGTTCAAAGCTATCTGCAGCTCAGCAGGAGTTTCAAAATTCTTACATCCAGGTTTGTAATGCATATCGTGACAGCAAAACAGATCAAAATACATTTTGGTGGTTAGAAGCGTTTGATCATGCTGAGCAGAACAAGGATTTCTCGACTGAGTTGCTTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTTCTCGTTTCCGGAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCAGCTAGAGGCCTCTAGGAAAGTGCTATTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGCGTGGGTAAATGCCAAAATTGTCAACCTAATTGTGATGGTCCCCCATGTGTTCTGTGTGAACTAGATGAATTGTTTCAGGAATATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCGGCTGAGGCAGTAGATTTTCAGAAGAAAAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCATAGTTCAACCGGATCTGATATTGGTTATGAAGAATCAAAAAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAAAGCTATTGCAAGGTTCGGTTGGGAAGAGACAGGGTTTCAGCTGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTTCCCATGATGAAATAATGATGGCGATTTCCCGTTTGCACCTAAGGGCAAATGAAAATGATCAATCTCTTGATGCTCTAGGTGAAAATGAATTATATGCGGCTAGCTCAAGCTTTTCCCACGATAAGTTTATGTCATTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATTGGAAAGTCCAGATAGTTCTTCTTTCTCTCAAGAGACAACTACAATGTCAAACTCTACTGAAGAGAAGGGTGCACTCATATCCAAAGCTGATGATCAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCAATCAGAAAATGGTATTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAGCATAGCAAGATTCATAATTGGGTTATGTGCCCTACATGTCGACAGCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGTACAGAATGAATCTTCCAATTCTTCAATGCTGCATACAATTGACAGCTGTGAAAAATGTGAAGCATCCATGAGTGTTAAAGGCTCATATGGAACTAAGGAGAATGGGTTCTTGATATGGCATTGGAGCCTATATGACTAA 4389 0.3992 MGRRKSKPHRSGGIILETNATAETDLDKQNVVEAGEEKKNDSGDIDKPYFVDVDRSGWLSSEHLDISEVVLRDLNLREGFSGFELSEDFYQDPHYSLRFRVCNANNVLGRIGHWPVLPYTDIHLEFVKRVTVEHMETCTVLLSGIFDGPDEGVSGLIHLVSLKFVTVRAICGIRLSEDIPSLRVRVEVLKSAFDACESLLDGSRQLWKKSMMNIMSWLRPETMTSEVRYGFGSCMKMEVDPQTEKGDDICYTRKYARFDPSGFYEAIKPSKAAPMLDDDIPELLPELRPYQRRAAFWMVEREKAMEESQSERERNQFLSPLSVPVDFLDTSSKMFFNPFNGNISLCPETSSPCVFGGILADEMGLGKTVELLACIFAHRRSASGSEIMIDSVPQVNGDQNLTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCENKTCKTTISVRDGEYACQMCSELIQATESPVASGATLIVCPAPILPQWHDEITRHTLPGSLKTCVYEGVRDTSLSNTSVMDISDLASADIVITTYDVLKEDLSHDSYRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNENRWWTEVIRDPYEKGDIRAMEFTHRFFKQIMWRSSKEHVADELDLPSQVECLSWLTLSSVEEHFYQRQHETCVRDSHEVIENLRNDILNRSIPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRLVVALNGLAAIATIQKDFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLVANFALMLLSKGKQFSGTSAVKMTRKHFIEKVDHCQVKRQKINGCDNMNLTAASVEPSNVASSPSENSLNEDWEFDSVSASSVKSLIAECEDLKQKYLSVFSSKLSAAQQEFQNSYIQVCNAYRDSKTDQNTFWWLEAFDHAEQNKDFSTELLRKIEEAISGTSNNSKSSRIASRFRSISSLKYQIQTGLDQLEASRKVLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDELFQEYEARLFVLKNERGGIISSAEAVDFQKKNFALNHFLSKLSQSNHSSTGSDIGYEESKKRNVGQRVVVSRSASELELILGVIKSYCKVRLGRDRVSAATKHLHIFEGMRKEFGHARSLALAQAQYLRSHDEIMMAISRLHLRANENDQSLDALGENELYAASSSFSHDKFMSLTLLSQIKGKLRYLKGLVQSKQKLPLESPDSSSFSQETTTMSNSTEEKGALISKADDQTCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQHSKIHNWVMCPTCRQHTDFGNIAYAVDVQNESSNSSMLHTIDSCEKCEASMSVKGSYGTKENGFLIWHWSLYD 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00060 1462 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 1449 - -
Gabi3887g00060 1462 SMART PHD_3 412 480 IPR001965 -
Gabi3887g00060 1462 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
Gabi3887g00060 1462 SUPERFAMILY FYVE/PHD zinc finger 409 481 IPR011011 -
Gabi3887g00060 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 683 IPR027417 -
Gabi3887g00060 1462 SMART ultradead3 283 659 IPR014001 -
Gabi3887g00060 1462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1336 1421 IPR013083 -
Gabi3887g00060 1462 Pfam SNF2-related domain 290 782 IPR000330 GO:0005524|GO:0140658
Gabi3887g00060 1462 SUPERFAMILY RING/U-box 1349 1407 - -
Gabi3887g00060 1462 Gene3D - 479 706 IPR038718 -
Gabi3887g00060 1462 Gene3D - 351 395 IPR038718 -
Gabi3887g00060 1462 SMART ring_2 1355 1402 IPR001841 -
Gabi3887g00060 1462 CDD DEXQc_SHPRH 287 686 - -
Gabi3887g00060 1462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 478 IPR013083 -
Gabi3887g00060 1462 CDD PHD_TCF19_like 414 460 - -
Gabi3887g00060 1462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 463 648 IPR014001 -
Gabi3887g00060 1462 ProSitePatterns Zinc finger PHD-type signature. 413 479 IPR019786 -
Gabi3887g00060 1462 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00060 Gabi-Chr3887 418740 436419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00060 487 780 RAD5 or RAD16-like Gene Family AT5G22750 31.773 1.69e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3887g00060 SNF2_N 4e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00060 K15710 - gmx:100776659 2492.61