Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00059 ATGGGTAGACGAAAAAGTAAACCACATCGATCAGGTGGGATAATATTAGAAACAAATGCTACTGCTGAAACAGATTTGGATAAACAGAATGTTGTAGAAGCAGGGGAAGAAAAGAAGAATGATTCTGGTGACATTGATAAACCTTATTTTGTTGACGTTGACCGGTCTGGTTGGTTGTCCAGTGAACACCTTGATATTTCTGAAGTAGTTTTAAGGGATTTAAATTTGAGAGAAGGTTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCCTCACTATTCATTAAGATTTCGGGTGTGTAATGCCAATAATGTTCTTGGTCGAATAGGCCATTGGCCTGTTTTACCATATACTGATATTCATCTAGAGTTTGTCAAAAGAGTTACAGTTGAGCATATGGAAACTTGTACAGTGTTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTATTCACTTGGTAAGTTTGAAATTTGTTACAGTAAGGGCAATTTGTGGGATTAGGCTTTCTGAGGACATTCCCTCCCTCAGAGTAAGGGTAGAGGTACTAAAGAGTGCTTTTGATGCATGCGAGTCACTTCTTGATGGTTCTAGACAACTATGGAAAAAGAGTATGATGAATATCATGTCTTGGCTACGTCCAGAAACAATGACTTCAGAAGTTAGGTATGGGTTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAGACAGAGAAGGGAGATGACATTTGCTACACCAGGAAATATGCAAGGTTTGATCCTTCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGCGCCAATGCTTGATGATGACATACCTGAGTTACTTCCTGAACTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAATGGAAGAAAGTCAGAGTGAAAGAGAAAGAAATCAGTTTCTTTCTCCATTAAGTGTGCCTGTGGATTTTCTTGACACAAGTTCTAAAATGTTTTTCAATCCATTCAATGGAAATATTTCGTTGTGCCCAGAGACTTCTTCGCCTTGTGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGTATCTTTGCTCACCGGAGATCAGCATCTGGAAGTGAGATAATGATTGATTCAGTGCCTCAAGTTAACGGGGACCAAAACCTAACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGTGAAAGTCTCAAATATCAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCTGATTGTGTTGGTTATTCACCTAAAGGTAAATCACTGAAATCAAAACAAGGATGTGAAAACAAGACATGTAAAACCACCATATCTGTGAGGGATGGGGAATATGCATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCGGTTGCCTCTGGTGCCACTCTCATTGTTTGTCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTACACGTCATACACTTCCAGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGACACATCTTTATCCAATACATCTGTGATGGATATCAGCGATCTTGCCAGTGCTGACATTGTAATAACTACGTATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTTATAGACATGAAGGTGATCGTCACTTTCTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTTTGGATGAGGCTCAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTGAGACTCCATTCGAAGCATCATTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACCTCTATGGACTTTTAAGATTTCTTAAAGCTAGTCCTTTCAATGAAAACAGGTGGTGGACTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATAAGAGCTATGGAATTTACACACAGATTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGTGGAATGCCTCTCTTGGCTTACACTCTCATCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATTCCCATGAAGTTATTGAAAATCTGAGAAATGATATTCTGAATAGAAGTATCCCAGGTTCTGTATCATTGAATGGTTCCTCTGATCCATTAATCACTCACACAGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTACGGTCCCTGCAGCAGTCGCCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGTAAAACCAAGATAGAAGGTGAGGAAGCTCTTAGGAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTACAATACAAAAGGATTTTTCTCAAGCTGCATTGCTCTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACTGGTTGCAAACTTTGCTTTAATGTTGCTCTCCAAAGGAAAGCAGTTCTCTGGAACTTCTGCAGTTAAGATGACAAGAAAGCATTTTATTGAAAAGGTTGATCATTGTCAGGTGAAGAGGCAAAAAATAAATGGATGTGATAACATGAATTTAACAGCGGCTTCTGTAGAACCATCAAATGTTGCATCTAGCCCATCAGAAAATAGCTTAAATGAGGATTGGGAATTTGATAGTGTATCAGCCAGTTCTGTCAAATCTCTGATAGCAGAATGTGAAGATTTAAAACAGAAATACTTATCCGTATTCAGTTCAAAGCTATCTGCAGCTCAGCAGGAGTTTCAAAATTCTTACATCCAGGTTTGTAATGCATATCGTGACAGCAAAACAGATCAAAATACATTTTGGTGGTTAGAAGCGTTTGATCATGCTGAGCAGAACAAGGATTTCTCGACTGAGTTGCTTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTTCTCGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCAGCTAGAGGCCTCTAGGAAAGTGCTATTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGCGTGGGTAAATGCCAAAATTGTCAACCTAATTGTGATGGTCCCCCATGTGTTCTGTGTGAACTAGATGAATTGTTTCAGGAATATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCGGCTGAGGCAGTAGATTTTCAGAAGAAAAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCATAGTTCAACCGGATCTGATATTGGTTATGAAGAATCAAAAAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAAAGCTATTGCAAGGTTCGGTTGGGAAGAGACAGGGTTTCAGCTGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTTCCCATGATGAAATAATGATGGCGATTTCCCGTTTGCACCTAAGGGCAAATGAAAATGATCAATCTCTTGATGCTCTAGGTGAAAATGAATTATATGCGGCTAGCTCAAGCTTTTCCCACGATAAGTTTATGTCATTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATTGGAAAGTCCAGATAGTTCTTCTTTCTCTCAAGAGACAACTACAATGTCAAACTCTACTGAAGAGAAGGGTGCACTCATATCCAAAGCTGATGATCAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCAATCAGAAAATGGTATTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAGCATAGCAAGATTCATAATTGGGTTATGTGCCCTACATGTCGACAGCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGTACAGAATGAATCTTCCAATTCTTCAATGCTGCATACAATTGACAGCTGTGAAAAATGTGAAGCATCCATGAGTGTTAAAGGCTCATATGGAACTAAGATTGAGGCAATCACAAGAAGAATCTTGTGGGTAAAGGCTACCGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCATTTGCTGCCAATAACATCACCTATATTCGGATGAAGGGAGGCAGGAAAGCACATGTTGCCATCAGTCAATTTAGAGAAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTTAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACTCAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGGAGCAGTCATTCATTCATTAGTGGCAACACAAAAAATCAAGACCAACCTGTTTTAACCCTGAAGGATGTCGAATCCTTACTGGCAAGAGCACCTCTAACGATGCCAGAAAGTGATGAAAATCCTAATCCTAATTCAAATACAAATCTAAGTCACTTGCCACCATCAATGGCCGCGGCTATTGCTGCTGAGAGGAGACTTAATGAGCAGAGGACATGA 4983 0.3998 MGRRKSKPHRSGGIILETNATAETDLDKQNVVEAGEEKKNDSGDIDKPYFVDVDRSGWLSSEHLDISEVVLRDLNLREGFSGFELSEDFYQDPHYSLRFRVCNANNVLGRIGHWPVLPYTDIHLEFVKRVTVEHMETCTVLLSGIFDGPDEGVSGLIHLVSLKFVTVRAICGIRLSEDIPSLRVRVEVLKSAFDACESLLDGSRQLWKKSMMNIMSWLRPETMTSEVRYGFGSCMKMEVDPQTEKGDDICYTRKYARFDPSGFYEAIKPSKAAPMLDDDIPELLPELRPYQRRAAFWMVEREKAMEESQSERERNQFLSPLSVPVDFLDTSSKMFFNPFNGNISLCPETSSPCVFGGILADEMGLGKTVELLACIFAHRRSASGSEIMIDSVPQVNGDQNLTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCENKTCKTTISVRDGEYACQMCSELIQATESPVASGATLIVCPAPILPQWHDEITRHTLPGSLKTCVYEGVRDTSLSNTSVMDISDLASADIVITTYDVLKEDLSHDSYRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNENRWWTEVIRDPYEKGDIRAMEFTHRFFKQIMWRSSKEHVADELDLPSQVECLSWLTLSSVEEHFYQRQHETCVRDSHEVIENLRNDILNRSIPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRLVVALNGLAAIATIQKDFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLVANFALMLLSKGKQFSGTSAVKMTRKHFIEKVDHCQVKRQKINGCDNMNLTAASVEPSNVASSPSENSLNEDWEFDSVSASSVKSLIAECEDLKQKYLSVFSSKLSAAQQEFQNSYIQVCNAYRDSKTDQNTFWWLEAFDHAEQNKDFSTELLRKIEEAISGTSNNSKSSRIASRSLKYQIQTGLDQLEASRKVLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDELFQEYEARLFVLKNERGGIISSAEAVDFQKKNFALNHFLSKLSQSNHSSTGSDIGYEESKKRNVGQRVVVSRSASELELILGVIKSYCKVRLGRDRVSAATKHLHIFEGMRKEFGHARSLALAQAQYLRSHDEIMMAISRLHLRANENDQSLDALGENELYAASSSFSHDKFMSLTLLSQIKGKLRYLKGLVQSKQKLPLESPDSSSFSQETTTMSNSTEEKGALISKADDQTCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQHSKIHNWVMCPTCRQHTDFGNIAYAVDVQNESSNSSMLHTIDSCEKCEASMSVKGSYGTKIEAITRRILWVKATDHKAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFREKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDSVEESIYKLNRSRSSHSFISGNTKNQDQPVLTLKDVESLLARAPLTMPESDENPNPNSNTNLSHLPPSMAAAIAAERRLNEQRT 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00059 1660 Pfam SNF2-related domain 290 782 IPR000330 GO:0005524|GO:0140658
Gabi3887g00059 1660 SMART helicmild6 1475 1562 IPR001650 -
Gabi3887g00059 1660 SMART PHD_3 412 480 IPR001965 -
Gabi3887g00059 1660 Gene3D - 351 395 IPR038718 -
Gabi3887g00059 1660 Gene3D - 479 706 IPR038718 -
Gabi3887g00059 1660 SUPERFAMILY RING/U-box 1344 1402 - -
Gabi3887g00059 1660 MobiDBLite consensus disorder prediction 1626 1642 - -
Gabi3887g00059 1660 CDD SF2_C_SNF 1441 1573 - -
Gabi3887g00059 1660 SUPERFAMILY FYVE/PHD zinc finger 409 481 IPR011011 -
Gabi3887g00059 1660 CDD DEXQc_SHPRH 287 686 - -
Gabi3887g00059 1660 MobiDBLite consensus disorder prediction 1622 1660 - -
Gabi3887g00059 1660 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1447 1613 IPR001650 -
Gabi3887g00059 1660 Gene3D - 1412 1651 IPR027417 -
Gabi3887g00059 1660 SMART ring_2 1350 1397 IPR001841 -
Gabi3887g00059 1660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 478 IPR013083 -
Gabi3887g00059 1660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1331 1411 IPR013083 -
Gabi3887g00059 1660 Pfam Helicase conserved C-terminal domain 1444 1562 IPR001650 -
Gabi3887g00059 1660 SMART ultradead3 283 659 IPR014001 -
Gabi3887g00059 1660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 683 IPR027417 -
Gabi3887g00059 1660 ProSiteProfiles Zinc finger RING-type profile. 1350 1398 IPR001841 -
Gabi3887g00059 1660 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 1659 - -
Gabi3887g00059 1660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1619 IPR027417 -
Gabi3887g00059 1660 CDD PHD_TCF19_like 414 460 - -
Gabi3887g00059 1660 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 463 648 IPR014001 -
Gabi3887g00059 1660 ProSitePatterns Zinc finger PHD-type signature. 413 479 IPR019786 -
Gabi3887g00059 1660 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00059 Gabi-Chr3887 418740 445557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00059 487 780 RAD5 or RAD16-like Gene Family AT5G22750 31.773 2.00e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3887g00059 SNF2_N 5.2e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00059 K15710 - gmx:100776659 2858.17