Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00058 ATGGGTAGACGAAAAAGTAAACCACATCGATCAGGTGGGATAATATTAGAAACAAATGCTACTGCTGAAACAGATTTGGATAAACAGAATGTTGTAGAAGCAGGGGAAGAAAAGAAGAATGATTCTGGTGACATTGATAAACCTTATTTTGTTGACGTTGACCGGTCTGGTTGGTTGTCCAGTGAACACCTTGATATTTCTGAAGTAGTTTTAAGGGATTTAAATTTGAGAGAAGGTTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCCTCACTATTCATTAAGATTTCGGGTGTGTAATGCCAATAATGTTCTTGGTCGAATAGGCCATTGGCCTGTTTTACCATATACTGATATTCATCTAGAGTTTGTCAAAAGAGTTACAGTTGAGCATATGGAAACTTGTACAGTGTTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTATTCACTTGGTAAGTTTGAAATTTGTTACAGTAAGGGCAATTTGTGGGATTAGGCTTTCTGAGGACATTCCCTCCCTCAGAGTAAGGGTAGAGGTACTAAAGAGTGCTTTTGATGCATGCGAGTCACTTCTTGATGGTTCTAGACAACTATGGAAAAAGAGTATGATGAATATCATGTCTTGGCTACGTCCAGAAACAATGACTTCAGAAGTTAGGTATGGGTTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAGACAGAGAAGGGAGATGACATTTGCTACACCAGGAAATATGCAAGGTTTGATCCTTCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGCGCCAATGCTTGATGATGACATACCTGAGTTACTTCCTGAACTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAATGGAAGAAAGTCAGAGTGAAAGAGAAAGAAATCAGTTTCTTTCTCCATTAAGTGTGCCTGTGGATTTTCTTGACACAAGTTCTAAAATGTTTTTCAATCCATTCAATGGAAATATTTCGTTGTGCCCAGAGACTTCTTCGCCTTGTGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGTATCTTTGCTCACCGGAGATCAGCATCTGGAAGTGAGATAATGATTGATTCAGTGCCTCAAGTTAACGGGGACCAAAACCTAACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGTGAAAGTCTCAAATATCAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCTGATTGTGTTGGTTATTCACCTAAAGGTAAATCACTGAAATCAAAACAAGGATGTGAAAACAAGACATGTAAAACCACCATATCTGTGAGGGATGGGGAATATGCATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCGGTTGCCTCTGGTGCCACTCTCATTGTTTGTCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTACACGTCATACACTTCCAGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGACACATCTTTATCCAATACATCTGTGATGGATATCAGCGATCTTGCCAGTGCTGACATTGTAATAACTACGTATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTTATAGACATGAAGGTGATCGTCACTTTCTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTTTGGATGAGGCTCAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTGAGACTCCATTCGAAGCATCATTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACCTCTATGGACTTTTAAGATTTCTTAAAGCTAGTCCTTTCAATGAAAACAGGTGGTGGACTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATAAGAGCTATGGAATTTACACACAGATTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGTGGAATGCCTCTCTTGGCTTACACTCTCATCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATTCCCATGAAGTTATTGAAAATCTGAGAAATGATATTCTGAATAGAAGTATCCCAGGTTCTGTATCATTGAATGGTTCCTCTGATCCATTAATCACTCACACAGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTACGGTCCCTGCAGCAGTCGCCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGTAAAACCAAGATAGAAGGTGAGGAAGCTCTTAGGAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTACAATACAAAAGGATTTTTCTCAAGCTGCATTGCTCTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACTGGTTGCAAACTTTGCTTTAATGTTGCTCTCCAAAGGAAAGCAGTTCTCTGGAACTTCTGCAGTTAAGATGACAAGAAAGCATTTTATTGAAAAGGTTGATCATTGTCAGGTGAAGAGGCAAAAAATAAATGGATGTGATAACATGAATTTAACAGCGGCTTCTGTAGAACCATCAAATGTTGCATCTAGCCCATCAGAAAATAGCTTAAATGAGGATTGGGAATTTGATAGTGTATCAGCCAGTTCTGTCAAATCTCTGATAGCAGAATGTGAAGATTTAAAACAGAAATACTTATCCGTATTCAGTTCAAAGCTATCTGCAGCTCAGCAGGAGTTTCAAAATTCTTACATCCAGGTTTGTAATGCATATCGTGACAGCAAAACAGATCAAAATACATTTTGGTGGTTAGAAGCGTTTGATCATGCTGAGCAGAACAAGGATTTCTCGACTGAGTTGCTTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTTCTCGTTTCCGGAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCAGCTAGAGGCCTCTAGGAAAGTGCTATTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGCGTGGGTAAATGCCAAAATTGTCAACCTAATTGTGATGGTCCCCCATGTGTTCTGTGTGAACTAGATGAATTGTTTCAGGAATATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCGGCTGAGGCAGTAGATTTTCAGAAGAAAAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCATAGTTCAACCGGATCTGATATTGGTTATGAAGAATCAAAAAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAAAGCTATTGCAAGGTTCGGTTGGGAAGAGACAGGGTTTCAGCTGCCACCAAGCATTTACATATTTTTGAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTTCCCATGATGAAATAATGATGGCGATTTCCCGTTTGCACCTAAGGGCAAATGAAAATGATCAATCTCTTGATGCTCTAGGTGAAAATGAATTATATGCGGCTAGCTCAAGCTTTTCCCACGATAAGTTTATGTCATTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATTGGAAAGTCCAGATAGTTCTTCTTTCTCTCAAGAGACAACTACAATGTCAAACTCTACTGAAGAGAAGGGTGCACTCATATCCAAAGCTGATGATCAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCAATCAGAAAATGGTATTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAGCATAGCAAGATTCATAATTGGGTTATGTGCCCTACATGTCGACAGCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGTACAGAATGAATCTTCCAATTCTTCAATGCTGCATACAATTGACAGCTGTGAAAAATGTGAAGCATCCATGAGTGTTAAAGGCTCATATGGAACTAAGATTGAGGCAATCACAAGAAGAATCTTGTGGGTAAAGGCTACCGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCATTTGCTGCCAATAACATCACCTATATTCGGATGAAGGGAGGCAGGAAAGCACATGTTGCCATCAGTCAATTTAGAGAAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTTAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACTCAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGGAGCAGTCATTCATTCATTAGTGGCAACACAAAAAATCAAGACCAACCTGTTTTAACCCTGAAGGATGTCGAATCCTTACTGGCAAGAGCACCTCTAACGATGCCAGAAAGTGATGAAAATCCTAATCCTAATTCAAATACAAATCTAAGTCACTTGCCACCATCAATGGCCGCGGCTATTGCTGCTGAGAGGAGACTTAATGAGCAGAGGACATGA 4986 0.3997 MGRRKSKPHRSGGIILETNATAETDLDKQNVVEAGEEKKNDSGDIDKPYFVDVDRSGWLSSEHLDISEVVLRDLNLREGFSGFELSEDFYQDPHYSLRFRVCNANNVLGRIGHWPVLPYTDIHLEFVKRVTVEHMETCTVLLSGIFDGPDEGVSGLIHLVSLKFVTVRAICGIRLSEDIPSLRVRVEVLKSAFDACESLLDGSRQLWKKSMMNIMSWLRPETMTSEVRYGFGSCMKMEVDPQTEKGDDICYTRKYARFDPSGFYEAIKPSKAAPMLDDDIPELLPELRPYQRRAAFWMVEREKAMEESQSERERNQFLSPLSVPVDFLDTSSKMFFNPFNGNISLCPETSSPCVFGGILADEMGLGKTVELLACIFAHRRSASGSEIMIDSVPQVNGDQNLTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCENKTCKTTISVRDGEYACQMCSELIQATESPVASGATLIVCPAPILPQWHDEITRHTLPGSLKTCVYEGVRDTSLSNTSVMDISDLASADIVITTYDVLKEDLSHDSYRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNENRWWTEVIRDPYEKGDIRAMEFTHRFFKQIMWRSSKEHVADELDLPSQVECLSWLTLSSVEEHFYQRQHETCVRDSHEVIENLRNDILNRSIPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRLVVALNGLAAIATIQKDFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLVANFALMLLSKGKQFSGTSAVKMTRKHFIEKVDHCQVKRQKINGCDNMNLTAASVEPSNVASSPSENSLNEDWEFDSVSASSVKSLIAECEDLKQKYLSVFSSKLSAAQQEFQNSYIQVCNAYRDSKTDQNTFWWLEAFDHAEQNKDFSTELLRKIEEAISGTSNNSKSSRIASRFRSISSLKYQIQTGLDQLEASRKVLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDELFQEYEARLFVLKNERGGIISSAEAVDFQKKNFALNHFLSKLSQSNHSSTGSDIGYEESKKRNVGQRVVVSRSASELELILGVIKSYCKVRLGRDRVSAATKHLHIFEEFGHARSLALAQAQYLRSHDEIMMAISRLHLRANENDQSLDALGENELYAASSSFSHDKFMSLTLLSQIKGKLRYLKGLVQSKQKLPLESPDSSSFSQETTTMSNSTEEKGALISKADDQTCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQHSKIHNWVMCPTCRQHTDFGNIAYAVDVQNESSNSSMLHTIDSCEKCEASMSVKGSYGTKIEAITRRILWVKATDHKAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFREKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDSVEESIYKLNRSRSSHSFISGNTKNQDQPVLTLKDVESLLARAPLTMPESDENPNPNSNTNLSHLPPSMAAAIAAERRLNEQRT 1661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00058 1661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1332 1412 IPR013083 -
Gabi3887g00058 1661 SMART PHD_3 412 480 IPR001965 -
Gabi3887g00058 1661 Gene3D - 351 395 IPR038718 -
Gabi3887g00058 1661 Gene3D - 479 706 IPR038718 -
Gabi3887g00058 1661 SMART ring_2 1351 1398 IPR001841 -
Gabi3887g00058 1661 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 1660 - -
Gabi3887g00058 1661 Pfam SNF2-related domain 290 782 IPR000330 GO:0005524|GO:0140658
Gabi3887g00058 1661 SUPERFAMILY FYVE/PHD zinc finger 409 481 IPR011011 -
Gabi3887g00058 1661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1621 IPR027417 -
Gabi3887g00058 1661 CDD DEXQc_SHPRH 287 686 - -
Gabi3887g00058 1661 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1448 1614 IPR001650 -
Gabi3887g00058 1661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 478 IPR013083 -
Gabi3887g00058 1661 SMART helicmild6 1476 1563 IPR001650 -
Gabi3887g00058 1661 SMART ultradead3 283 659 IPR014001 -
Gabi3887g00058 1661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 683 IPR027417 -
Gabi3887g00058 1661 MobiDBLite consensus disorder prediction 1623 1661 - -
Gabi3887g00058 1661 SUPERFAMILY RING/U-box 1345 1403 - -
Gabi3887g00058 1661 Pfam Helicase conserved C-terminal domain 1445 1563 IPR001650 -
Gabi3887g00058 1661 CDD SF2_C_SNF 1442 1574 - -
Gabi3887g00058 1661 CDD PHD_TCF19_like 414 460 - -
Gabi3887g00058 1661 Gene3D - 1413 1652 IPR027417 -
Gabi3887g00058 1661 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 463 648 IPR014001 -
Gabi3887g00058 1661 ProSiteProfiles Zinc finger RING-type profile. 1351 1399 IPR001841 -
Gabi3887g00058 1661 MobiDBLite consensus disorder prediction 1627 1643 - -
Gabi3887g00058 1661 ProSitePatterns Zinc finger PHD-type signature. 413 479 IPR019786 -
Gabi3887g00058 1661 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00058 Gabi-Chr3887 418740 445557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00058 487 780 RAD5 or RAD16-like Gene Family AT5G22750 31.773 2.11e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3887g00058 SNF2_N 5.2e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00058 K15710 - gmx:100776659 2852.39