Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3887g00058 | ATGGGTAGACGAAAAAGTAAACCACATCGATCAGGTGGGATAATATTAGAAACAAATGCTACTGCTGAAACAGATTTGGATAAACAGAATGTTGTAGAAGCAGGGGAAGAAAAGAAGAATGATTCTGGTGACATTGATAAACCTTATTTTGTTGACGTTGACCGGTCTGGTTGGTTGTCCAGTGAACACCTTGATATTTCTGAAGTAGTTTTAAGGGATTTAAATTTGAGAGAAGGTTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCCTCACTATTCATTAAGATTTCGGGTGTGTAATGCCAATAATGTTCTTGGTCGAATAGGCCATTGGCCTGTTTTACCATATACTGATATTCATCTAGAGTTTGTCAAAAGAGTTACAGTTGAGCATATGGAAACTTGTACAGTGTTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTATTCACTTGGTAAGTTTGAAATTTGTTACAGTAAGGGCAATTTGTGGGATTAGGCTTTCTGAGGACATTCCCTCCCTCAGAGTAAGGGTAGAGGTACTAAAGAGTGCTTTTGATGCATGCGAGTCACTTCTTGATGGTTCTAGACAACTATGGAAAAAGAGTATGATGAATATCATGTCTTGGCTACGTCCAGAAACAATGACTTCAGAAGTTAGGTATGGGTTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAGACAGAGAAGGGAGATGACATTTGCTACACCAGGAAATATGCAAGGTTTGATCCTTCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGCGCCAATGCTTGATGATGACATACCTGAGTTACTTCCTGAACTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAATGGAAGAAAGTCAGAGTGAAAGAGAAAGAAATCAGTTTCTTTCTCCATTAAGTGTGCCTGTGGATTTTCTTGACACAAGTTCTAAAATGTTTTTCAATCCATTCAATGGAAATATTTCGTTGTGCCCAGAGACTTCTTCGCCTTGTGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGTATCTTTGCTCACCGGAGATCAGCATCTGGAAGTGAGATAATGATTGATTCAGTGCCTCAAGTTAACGGGGACCAAAACCTAACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGTGAAAGTCTCAAATATCAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCTGATTGTGTTGGTTATTCACCTAAAGGTAAATCACTGAAATCAAAACAAGGATGTGAAAACAAGACATGTAAAACCACCATATCTGTGAGGGATGGGGAATATGCATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCGGTTGCCTCTGGTGCCACTCTCATTGTTTGTCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTACACGTCATACACTTCCAGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGACACATCTTTATCCAATACATCTGTGATGGATATCAGCGATCTTGCCAGTGCTGACATTGTAATAACTACGTATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTTATAGACATGAAGGTGATCGTCACTTTCTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTTTGGATGAGGCTCAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTGAGACTCCATTCGAAGCATCATTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACCTCTATGGACTTTTAAGATTTCTTAAAGCTAGTCCTTTCAATGAAAACAGGTGGTGGACTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATAAGAGCTATGGAATTTACACACAGATTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGTGGAATGCCTCTCTTGGCTTACACTCTCATCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATTCCCATGAAGTTATTGAAAATCTGAGAAATGATATTCTGAATAGAAGTATCCCAGGTTCTGTATCATTGAATGGTTCCTCTGATCCATTAATCACTCACACAGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTACGGTCCCTGCAGCAGTCGCCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGTAAAACCAAGATAGAAGGTGAGGAAGCTCTTAGGAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTACAATACAAAAGGATTTTTCTCAAGCTGCATTGCTCTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACTGGTTGCAAACTTTGCTTTAATGTTGCTCTCCAAAGGAAAGCAGTTCTCTGGAACTTCTGCAGTTAAGATGACAAGAAAGCATTTTATTGAAAAGGTTGATCATTGTCAGGTGAAGAGGCAAAAAATAAATGGATGTGATAACATGAATTTAACAGCGGCTTCTGTAGAACCATCAAATGTTGCATCTAGCCCATCAGAAAATAGCTTAAATGAGGATTGGGAATTTGATAGTGTATCAGCCAGTTCTGTCAAATCTCTGATAGCAGAATGTGAAGATTTAAAACAGAAATACTTATCCGTATTCAGTTCAAAGCTATCTGCAGCTCAGCAGGAGTTTCAAAATTCTTACATCCAGGTTTGTAATGCATATCGTGACAGCAAAACAGATCAAAATACATTTTGGTGGTTAGAAGCGTTTGATCATGCTGAGCAGAACAAGGATTTCTCGACTGAGTTGCTTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTTCTCGTTTCCGGAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCAGCTAGAGGCCTCTAGGAAAGTGCTATTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGCGTGGGTAAATGCCAAAATTGTCAACCTAATTGTGATGGTCCCCCATGTGTTCTGTGTGAACTAGATGAATTGTTTCAGGAATATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCGGCTGAGGCAGTAGATTTTCAGAAGAAAAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCATAGTTCAACCGGATCTGATATTGGTTATGAAGAATCAAAAAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAAAGCTATTGCAAGGTTCGGTTGGGAAGAGACAGGGTTTCAGCTGCCACCAAGCATTTACATATTTTTGAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTTCCCATGATGAAATAATGATGGCGATTTCCCGTTTGCACCTAAGGGCAAATGAAAATGATCAATCTCTTGATGCTCTAGGTGAAAATGAATTATATGCGGCTAGCTCAAGCTTTTCCCACGATAAGTTTATGTCATTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATTGGAAAGTCCAGATAGTTCTTCTTTCTCTCAAGAGACAACTACAATGTCAAACTCTACTGAAGAGAAGGGTGCACTCATATCCAAAGCTGATGATCAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCAATCAGAAAATGGTATTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAGCATAGCAAGATTCATAATTGGGTTATGTGCCCTACATGTCGACAGCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGTACAGAATGAATCTTCCAATTCTTCAATGCTGCATACAATTGACAGCTGTGAAAAATGTGAAGCATCCATGAGTGTTAAAGGCTCATATGGAACTAAGATTGAGGCAATCACAAGAAGAATCTTGTGGGTAAAGGCTACCGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCATTTGCTGCCAATAACATCACCTATATTCGGATGAAGGGAGGCAGGAAAGCACATGTTGCCATCAGTCAATTTAGAGAAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTTAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACTCAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGGAGCAGTCATTCATTCATTAGTGGCAACACAAAAAATCAAGACCAACCTGTTTTAACCCTGAAGGATGTCGAATCCTTACTGGCAAGAGCACCTCTAACGATGCCAGAAAGTGATGAAAATCCTAATCCTAATTCAAATACAAATCTAAGTCACTTGCCACCATCAATGGCCGCGGCTATTGCTGCTGAGAGGAGACTTAATGAGCAGAGGACATGA | 4986 | 0.3997 | MGRRKSKPHRSGGIILETNATAETDLDKQNVVEAGEEKKNDSGDIDKPYFVDVDRSGWLSSEHLDISEVVLRDLNLREGFSGFELSEDFYQDPHYSLRFRVCNANNVLGRIGHWPVLPYTDIHLEFVKRVTVEHMETCTVLLSGIFDGPDEGVSGLIHLVSLKFVTVRAICGIRLSEDIPSLRVRVEVLKSAFDACESLLDGSRQLWKKSMMNIMSWLRPETMTSEVRYGFGSCMKMEVDPQTEKGDDICYTRKYARFDPSGFYEAIKPSKAAPMLDDDIPELLPELRPYQRRAAFWMVEREKAMEESQSERERNQFLSPLSVPVDFLDTSSKMFFNPFNGNISLCPETSSPCVFGGILADEMGLGKTVELLACIFAHRRSASGSEIMIDSVPQVNGDQNLTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCENKTCKTTISVRDGEYACQMCSELIQATESPVASGATLIVCPAPILPQWHDEITRHTLPGSLKTCVYEGVRDTSLSNTSVMDISDLASADIVITTYDVLKEDLSHDSYRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNENRWWTEVIRDPYEKGDIRAMEFTHRFFKQIMWRSSKEHVADELDLPSQVECLSWLTLSSVEEHFYQRQHETCVRDSHEVIENLRNDILNRSIPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRLVVALNGLAAIATIQKDFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLVANFALMLLSKGKQFSGTSAVKMTRKHFIEKVDHCQVKRQKINGCDNMNLTAASVEPSNVASSPSENSLNEDWEFDSVSASSVKSLIAECEDLKQKYLSVFSSKLSAAQQEFQNSYIQVCNAYRDSKTDQNTFWWLEAFDHAEQNKDFSTELLRKIEEAISGTSNNSKSSRIASRFRSISSLKYQIQTGLDQLEASRKVLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDELFQEYEARLFVLKNERGGIISSAEAVDFQKKNFALNHFLSKLSQSNHSSTGSDIGYEESKKRNVGQRVVVSRSASELELILGVIKSYCKVRLGRDRVSAATKHLHIFEEFGHARSLALAQAQYLRSHDEIMMAISRLHLRANENDQSLDALGENELYAASSSFSHDKFMSLTLLSQIKGKLRYLKGLVQSKQKLPLESPDSSSFSQETTTMSNSTEEKGALISKADDQTCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQHSKIHNWVMCPTCRQHTDFGNIAYAVDVQNESSNSSMLHTIDSCEKCEASMSVKGSYGTKIEAITRRILWVKATDHKAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFREKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDSVEESIYKLNRSRSSHSFISGNTKNQDQPVLTLKDVESLLARAPLTMPESDENPNPNSNTNLSHLPPSMAAAIAAERRLNEQRT | 1661 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3887g00058 | 1661 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1332 | 1412 | IPR013083 | - | |
| Gabi3887g00058 | 1661 | SMART | PHD_3 | 412 | 480 | IPR001965 | - | |
| Gabi3887g00058 | 1661 | Gene3D | - | 351 | 395 | IPR038718 | - | |
| Gabi3887g00058 | 1661 | Gene3D | - | 479 | 706 | IPR038718 | - | |
| Gabi3887g00058 | 1661 | SMART | ring_2 | 1351 | 1398 | IPR001841 | - | |
| Gabi3887g00058 | 1661 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER | 3 | 1660 | - | - | |
| Gabi3887g00058 | 1661 | Pfam | SNF2-related domain | 290 | 782 | IPR000330 | GO:0005524|GO:0140658 | |
| Gabi3887g00058 | 1661 | SUPERFAMILY | FYVE/PHD zinc finger | 409 | 481 | IPR011011 | - | |
| Gabi3887g00058 | 1661 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 690 | 1621 | IPR027417 | - | |
| Gabi3887g00058 | 1661 | CDD | DEXQc_SHPRH | 287 | 686 | - | - |
Showing 1 to 10 of 26 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3887g00058 | K15710 | - | gmx:100776659 | 2852.39 |
Showing 1 to 1 of 1 entries