Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3887g00057 | ATGGGTAGACGAAAAAGTAAACCACATCGATCAGGTGGGATAATATTAGAAACAAATGCTACTGCTGAAACAGATTTGGATAAACAGAATGTTGTAGAAGCAGGGGAAGAAAAGAAGAATGATTCTGGTGACATTGATAAACCTTATTTTGTTGACGTTGACCGGTCTGGTTGGTTGTCCAGTGAACACCTTGATATTTCTGAAGTAGTTTTAAGGGATTTAAATTTGAGAGAAGGTTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCCTCACTATTCATTAAGATTTCGGGTGTGTAATGCCAATAATGTTCTTGGTCGAATAGGCCATTGGCCTGTTTTACCATATACTGATATTCATCTAGAGTTTGTCAAAAGAGTTACAGTTGAGCATATGGAAACTTGTACAGTGTTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTATTCACTTGGTAAGTTTGAAATTTGTTACAGTAAGGGCAATTTGTGGGATTAGGCTTTCTGAGGACATTCCCTCCCTCAGAGTAAGGGTAGAGGTACTAAAGAGTGCTTTTGATGCATGCGAGTCACTTCTTGATGGTTCTAGACAACTATGGAAAAAGAGTATGATGAATATCATGTCTTGGCTACGTCCAGAAACAATGACTTCAGAAGTTAGGTATGGGTTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAGACAGAGAAGGGAGATGACATTTGCTACACCAGGAAATATGCAAGGTTTGATCCTTCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGCGCCAATGCTTGATGATGACATACCTGAGTTACTTCCTGAACTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAATGGAAGAAAGTCAGAGTGAAAGAGAAAGAAATCAGTTTCTTTCTCCATTAAGTGTGCCTGTGGATTTTCTTGACACAAGTTCTAAAATGTTTTTCAATCCATTCAATGGAAATATTTCGTTGTGCCCAGAGACTTCTTCGCCTTGTGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGTATCTTTGCTCACCGGAGATCAGCATCTGGAAGTGAGATAATGATTGATTCAGTGCCTCAAGTTAACGGGGACCAAAACCTAACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGTGAAAGTCTCAAATATCAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCTGATTGTGTTGGTTATTCACCTAAAGGTAAATCACTGAAATCAAAACAAGGATGTGAAAACAAGACATGTAAAACCACCATATCTGTGAGGGATGGGGAATATGCATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCGGTTGCCTCTGGTGCCACTCTCATTGTTTGTCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTACACGTCATACACTTCCAGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGACACATCTTTATCCAATACATCTGTGATGGATATCAGCGATCTTGCCAGTGCTGACATTGTAATAACTACGTATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTTATAGACATGAAGGTGATCGTCACTTTCTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTTTGGATGAGGCTCAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTGAGACTCCATTCGAAGCATCATTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACCTCTATGGACTTTTAAGATTTCTTAAAGCTAGTCCTTTCAATGAAAACAGGTGGTGGACTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATAAGAGCTATGGAATTTACACACAGATTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGTGGAATGCCTCTCTTGGCTTACACTCTCATCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATTCCCATGAAGTTATTGAAAATCTGAGAAATGATATTCTGAATAGAAGTATCCCAGGTTCTGTATCATTGAATGGTTCCTCTGATCCATTAATCACTCACACAGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTACGGTCCCTGCAGCAGTCGCCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGTAAAACCAAGATAGAAGGTGAGGAAGCTCTTAGGAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTACAATACAAAAGGATTTTTCTCAAGCTGCATTGCTCTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACTGGTTGCAAACTTTGCTTTAATGTTGCTCTCCAAAGGAAAGCAGTTCTCTGGAACTTCTGCAGTTAAGATGACAAGAAAGCATTTTATTGAAAAGGTTGATCATTGTCAGGTGAAGAGGCAAAAAATAAATGGATGTGATAACATGAATTTAACAGCGGCTTCTGTAGAACCATCAAATGTTGCATCTAGCCCATCAGAAAATAGCTTAAATGAGGATTGGGAATTTGATAGTGTATCAGCCAGTTCTGTCAAATCTCTGATAGCAGAATGTGAAGATTTAAAACAGAAATACTTATCCGTATTCAGTTCAAAGCTATCTGCAGCTCAGCAGGAGTTTCAAAATTCTTACATCCAGGTTTGTAATGCATATCGTGACAGCAAAACAGATCAAAATACATTTTGGTGGTTAGAAGCGTTTGATCATGCTGAGCAGAACAAGGATTTCTCGACTGAGTTGCTTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTTCTCGTTTCCGGAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCAGCTAGAGGCCTCTAGGAAAGTGCTATTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGCGTGGGTAAATGCCAAAATTGTCAACCTAATTGTGATGGTCCCCCATGTGTTCTGTGTGAACTAGATGAATTGTTTCAGGAATATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCGGCTGAGGCAGTAGATTTTCAGAAGAAAAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCATAGTTCAACCGGATCTGATATTGGTTATGAAGAATCAAAAAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAAAGCTATTGCAAGGTTCGGTTGGGAAGAGACAGGGTTTCAGCTGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTTCCCATGATGAAATAATGATGGCGATTTCCCGTTTGCACCTAAGGGCAAATGAAAATGATCAATCTCTTGATGCTCTAGGTGAAAATGAATTATATGCGGCTAGCTCAAGCTTTTCCCACGATAAGTTTATGTCATTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATTGGAAAGTCCAGATAGTTCTTCTTTCTCTCAAGAGACAACTACAATGTCAAACTCTACTGAAGAGAAGGGTGCACTCATATCCAAAGCTGATGATCAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCAATCAGAAAATGGTATTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAGCATAGCAAGATTCATAATTGGGTTATGTGCCCTACATGTCGACAGCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGTACAGAATGAATCTTCCAATTCTTCAATGCTGCATACAATTGACAGCTGTGAAAAATGTGAAGCATCCATGAGTGTTAAAGGCTCATATGGAACTAAGATTGAGGCAATCACAAGAAGAATCTTGTGGGTAAAGGCTACCGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCATTTGCTGCCAATAACATCACCTATATTCGGATGAAGGGAGGCAGGAAAGCACATGTTGCCATCAGTCAATTTAGAGAAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTTAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACTCAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGGAGCAGTCATTCATTCATTAGTGGCAACACAAAAAATCAAGACCAACCTGTTTTAACCCTGAAGGATGTCGAATCCTTACTGGCAAGAGCACCTCTAACGATGCCAGAAAGTGATGAAAATCCTAATCCTAATTCAAATACAAATCTAAGTCACTTGCCACCATCAATGGCCGCGGCTATTGCTGCTGAGAGGAGACTTAATGAGCAGAGGACATGA | 4998 | 0.4 | MGRRKSKPHRSGGIILETNATAETDLDKQNVVEAGEEKKNDSGDIDKPYFVDVDRSGWLSSEHLDISEVVLRDLNLREGFSGFELSEDFYQDPHYSLRFRVCNANNVLGRIGHWPVLPYTDIHLEFVKRVTVEHMETCTVLLSGIFDGPDEGVSGLIHLVSLKFVTVRAICGIRLSEDIPSLRVRVEVLKSAFDACESLLDGSRQLWKKSMMNIMSWLRPETMTSEVRYGFGSCMKMEVDPQTEKGDDICYTRKYARFDPSGFYEAIKPSKAAPMLDDDIPELLPELRPYQRRAAFWMVEREKAMEESQSERERNQFLSPLSVPVDFLDTSSKMFFNPFNGNISLCPETSSPCVFGGILADEMGLGKTVELLACIFAHRRSASGSEIMIDSVPQVNGDQNLTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCENKTCKTTISVRDGEYACQMCSELIQATESPVASGATLIVCPAPILPQWHDEITRHTLPGSLKTCVYEGVRDTSLSNTSVMDISDLASADIVITTYDVLKEDLSHDSYRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNENRWWTEVIRDPYEKGDIRAMEFTHRFFKQIMWRSSKEHVADELDLPSQVECLSWLTLSSVEEHFYQRQHETCVRDSHEVIENLRNDILNRSIPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRLVVALNGLAAIATIQKDFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLVANFALMLLSKGKQFSGTSAVKMTRKHFIEKVDHCQVKRQKINGCDNMNLTAASVEPSNVASSPSENSLNEDWEFDSVSASSVKSLIAECEDLKQKYLSVFSSKLSAAQQEFQNSYIQVCNAYRDSKTDQNTFWWLEAFDHAEQNKDFSTELLRKIEEAISGTSNNSKSSRIASRFRSISSLKYQIQTGLDQLEASRKVLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDELFQEYEARLFVLKNERGGIISSAEAVDFQKKNFALNHFLSKLSQSNHSSTGSDIGYEESKKRNVGQRVVVSRSASELELILGVIKSYCKVRLGRDRVSAATKHLHIFEGMRKEFGHARSLALAQAQYLRSHDEIMMAISRLHLRANENDQSLDALGENELYAASSSFSHDKFMSLTLLSQIKGKLRYLKGLVQSKQKLPLESPDSSSFSQETTTMSNSTEEKGALISKADDQTCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQHSKIHNWVMCPTCRQHTDFGNIAYAVDVQNESSNSSMLHTIDSCEKCEASMSVKGSYGTKIEAITRRILWVKATDHKAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFREKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDSVEESIYKLNRSRSSHSFISGNTKNQDQPVLTLKDVESLLARAPLTMPESDENPNPNSNTNLSHLPPSMAAAIAAERRLNEQRT | 1665 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3887g00057 | 1665 | Pfam | SNF2-related domain | 290 | 782 | IPR000330 | GO:0005524|GO:0140658 | |
Gabi3887g00057 | 1665 | SMART | PHD_3 | 412 | 480 | IPR001965 | - | |
Gabi3887g00057 | 1665 | ProSiteProfiles | Zinc finger RING-type profile. | 1355 | 1403 | IPR001841 | - | |
Gabi3887g00057 | 1665 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER | 3 | 1664 | - | - | |
Gabi3887g00057 | 1665 | Gene3D | - | 1417 | 1656 | IPR027417 | - | |
Gabi3887g00057 | 1665 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1336 | 1416 | IPR013083 | - | |
Gabi3887g00057 | 1665 | SMART | ring_2 | 1355 | 1402 | IPR001841 | - | |
Gabi3887g00057 | 1665 | SUPERFAMILY | FYVE/PHD zinc finger | 409 | 481 | IPR011011 | - | |
Gabi3887g00057 | 1665 | MobiDBLite | consensus disorder prediction | 1627 | 1665 | - | - | |
Gabi3887g00057 | 1665 | CDD | SF2_C_SNF | 1446 | 1578 | - | - | |
Gabi3887g00057 | 1665 | CDD | DEXQc_SHPRH | 287 | 686 | - | - | |
Gabi3887g00057 | 1665 | MobiDBLite | consensus disorder prediction | 1631 | 1647 | - | - | |
Gabi3887g00057 | 1665 | Gene3D | - | 351 | 395 | IPR038718 | - | |
Gabi3887g00057 | 1665 | Gene3D | - | 479 | 706 | IPR038718 | - | |
Gabi3887g00057 | 1665 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 406 | 478 | IPR013083 | - | |
Gabi3887g00057 | 1665 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1452 | 1618 | IPR001650 | - | |
Gabi3887g00057 | 1665 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 690 | 1624 | IPR027417 | - | |
Gabi3887g00057 | 1665 | SMART | ultradead3 | 283 | 659 | IPR014001 | - | |
Gabi3887g00057 | 1665 | SMART | helicmild6 | 1480 | 1567 | IPR001650 | - | |
Gabi3887g00057 | 1665 | Pfam | Helicase conserved C-terminal domain | 1449 | 1567 | IPR001650 | - | |
Gabi3887g00057 | 1665 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 274 | 683 | IPR027417 | - | |
Gabi3887g00057 | 1665 | SUPERFAMILY | RING/U-box | 1349 | 1407 | - | - | |
Gabi3887g00057 | 1665 | CDD | PHD_TCF19_like | 414 | 460 | - | - | |
Gabi3887g00057 | 1665 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 463 | 648 | IPR014001 | - | |
Gabi3887g00057 | 1665 | ProSitePatterns | Zinc finger PHD-type signature. | 413 | 479 | IPR019786 | - | |
Gabi3887g00057 | 1665 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3887g00057 | Gabi-Chr3887 | 418740 | 445557 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi3887g00057 | 487 | 780 | RAD5 or RAD16-like Gene Family | AT5G22750 | 31.773 | 2.10e-35 | 145 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Gabi3887g00057 | SNF2_N | 5.2e-88 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi3887g00057 | K15710 | - | gmx:100776659 | 2866.26 |