Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00051 ATGCTACTGAAGATTCTTAATCATTTTTCTGATTTTTATCAAAGAACCATGGTTTCCTCTCAATTCTCTACCTTAAATGGAGATAGTTCACAGAAGCCTTTCCTGAACCAGTTGCTTCTTCCAAATGGACCACCTGATCTTTTGCCTTCTGATTTTGTGGATTTTGAGTTTTCTGATGTGTTTGGTCTATCTCCTGTTGAAGCCTCAATGGCAGTGAGTTCCCAGAAACTTGGAAATTTGGTTGTTTCACCAGGTTCAAGTGAAATGATTTATAATGACCCTGCTATCATTCACATCCGCTCCCATTCGTTACTGGCCCCCTCAACCTCTATTAGTCAGTCCTTGGAGCTTAGCAAGCTTACCTTATATGAGACGGGTGATGCATTAGATATTGTGAAGGAGGTCTTTAGAGAAACACAGAAAGAACTTAAGGAACATTCTGTTAACAATGCTTCTGAAGAGCAAAGTAGTTTACAATTCAATAATTATGGTCTGAATTATCAGACTATTGGAGTTGAGGATTTTGAAGTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGTAAGGTGTACCAGGTGAAGAGGGCAGGTACTTCAGAAATATATGCAATGAAGGTCATGTGCAAGGATAAGATTATGCAGGGAAGTCATGCTGAATATGTAAAATCCGAAAGGGATATATTGACAAAGGTTGATCACCCATTTGTTGTACGGCTCAGATACTCATTCCAAACCCAATGTAGGCTGTACCTTGTGCTTGATTTTGTTAATGGTGGTCACCTTTTTTTTCATCTATATCACCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATGCTGCAGAGATTATTTGTGCTGTTTCTTATCTTCATGCAAATGGGATAATGCACAGGGATCTTAAACCTGAAAATATTCTTCTCGACTCAGATGGTCATGTAGTGTTAACAGATTTTGGTCTGGCTAAGAAATTCAATGAGACTGCAAGGTCAAACTCTATGTGTGGAACTTTAGAGTACATGGCCCCAGAAATTGTTATGGGGAAAGGTCATGATAAGGCAGCCGATTGGTGGAGTGTGGGAATTTTACTATTCGAAATGCTTGTGGGGAAGCTTCCTTTTACTGGTGGAAATAGACAAAAGATCCAGCAGAAGATAATTAAAGACAAAATGAAACTCCCAGCTTTTTTGTCAAGTGAGGCACATTCACTGTTAAAAGGGCTATTGCAGAAAGATGCCAGCAAACGCCTTGGGAGTGGACCAAGTGGCAGTGAGGAGATTAAAAGCCACAAGTGGTTTAAGTCAGTCCATTGGAAGAAACTGGAAGCCCGTGAAGTTAGGCCAAGCTTTGTCCCAGAAGTTGCTGGGAAGCACTGTGTTGCTAACTTTGAGGAGCGGTGGACTACCATGCCCTTGCTGGATTCTCCATCTGCTAGTCCCAAAAAACATGACAATTCCTTGCGATAA 1461 0.4107 MLLKILNHFSDFYQRTMVSSQFSTLNGDSSQKPFLNQLLLPNGPPDLLPSDFVDFEFSDVFGLSPVEASMAVSSQKLGNLVVSPGSSEMIYNDPAIIHIRSHSLLAPSTSISQSLELSKLTLYETGDALDIVKEVFRETQKELKEHSVNNASEEQSSLQFNNYGLNYQTIGVEDFEVLKVVGQGAFGKVYQVKRAGTSEIYAMKVMCKDKIMQGSHAEYVKSERDILTKVDHPFVVRLRYSFQTQCRLYLVLDFVNGGHLFFHLYHQGLFREDLARFYAAEIICAVSYLHANGIMHRDLKPENILLDSDGHVVLTDFGLAKKFNETARSNSMCGTLEYMAPEIVMGKGHDKAADWWSVGILLFEMLVGKLPFTGGNRQKIQQKIIKDKMKLPAFLSSEAHSLLKGLLQKDASKRLGSGPSGSEEIKSHKWFKSVHWKKLEAREVRPSFVPEVAGKHCVANFEERWTTMPLLDSPSASPKKHDNSLR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00051 486 CDD STKc_AGC 181 431 IPR045270 GO:0004674|GO:0005524
Gabi3887g00051 486 FunFam Non-specific serine/threonine protein kinase 172 275 - -
Gabi3887g00051 486 Gene3D Phosphorylase Kinase; domain 1 173 474 - -
Gabi3887g00051 486 SMART serkin_6 175 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3887g00051 486 SMART pkinase_C_6 432 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi3887g00051 486 SUPERFAMILY Protein kinase-like (PK-like) 158 478 IPR011009 -
Gabi3887g00051 486 FunFam Non-specific serine/threonine protein kinase 255 450 - -
Gabi3887g00051 486 PANTHER RIBOSOMAL PROTEIN S6 KINASE 140 477 - -
Gabi3887g00051 486 Pfam Protein kinase domain 175 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3887g00051 486 ProSiteProfiles AGC-kinase C-terminal domain profile. 432 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi3887g00051 486 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524
Gabi3887g00051 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Gabi3887g00051 486 ProSiteProfiles Protein kinase domain profile. 175 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3887g00051 486 Gene3D Transferase(Phosphotransferase) domain 1 255 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00051 Gabi-Chr3887 382583 386144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00051 17 478 AGC Kinase Gene Family AT3G08720 62.771 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Gabi3887g00051 Pkinase 2.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00051 K04688 - gmx:100803509 714.146