Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00050 ATGCTACTGAAGATTCTTAATCATTTTTCTGATTTTTATCAAAGAACCATGGTTTCCTCTCAATTCTCTACCTTAAATGGAGATAGTTCACAGAAGCCTTTCCTGAACCAGTTGCTTCTTCCAAATGGACCACCTGATCTTTTGCCTTCTGATTTTGTGGATTTTGAGTTTTCTGATGTGTTTGGTCTATCTCCTGTTGAAGCCTCAATGGCAGTGAGTTCCCAGAAACTTGGAAATTTGGTTGTTTCACCAGGTTCAAGTGAAATGATTTATAATGACCCTGCTATCATTCACATCCGCTCCCATTCGTTACTGGCCCCCTCAACCTCTATTAGTCAGTCCTTGGAGCTTAGCAAGCTTACCTTATATGAGACGGGTGATGCATTAGATATTGTGAAGGAGGTCTTTAGAGAAACACAGAAAGAACTTAAGGAACATTCTGTTAACAATGCTTCTGAAGAGCAAAGTAGTTTACAATTCAATAATTATGGTCTGAATTATCAGACTATTGGAGTTGAGGATTTTGAAGTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGTAAGGTGTACCAGGTGAAGAGGGCAGGTACTTCAGAAATATATGCAATGAAGGTCATGTGCAAGGATAAGATTATGCAGGGAAGTCATGCTGAATATGTAAAATCCGAAAGGGATATATTGACAAAGGTTGATCACCCATTTGTTGTACGGCTCAGATACTCATTCCAAACTTGCAGACCCAATGTAGGCTGTACCTTGTGCTTGATTTTGTTAATGGTGGTCACCTTTTTTTTCATCTATATCACCAAGGCCTATTCAGATTTGGCACGCTTCTATGCTGCAGAGATTATTTGTGCTGTTTCTTATCTTCATGCAAATGGGATAATGCACAGGGATCTTAAACCTGAAAATATTCTTCTCGACTCAGATGGTCATGTAGTGTTAACAGATTTTGGTCTGGCTAAGAAATTCAATGAGACTGCAAGGTCAAACTCTATGTGTGGAACTTTAGAGTACATGGCCCCAGAAATTGTTATGGGGAAAGGTCATGATAAGGCAGCCGATTGGTGGAGTGTGGGAATTTTACTATTCGAAATGCTTGTGGGGAAGCTTCCTTTTACTGGTGGAAATAGACAAAAGATCCAGCAGAAGATAATTAAAGACAAAATGAAACTCCCAGCTTTTTTGTCAAGTGAGGCACATTCACTGTTAAAAGGGCTATTGCAGAAAGATGCCAGCAAACGCCTTGGGAGTGGACCAAGTGGCAGTGAGGAGATTAAAAGCCACAAGTGGTTTAAGTCAGTCCATTGGAAGAAACTGGAAGCCCGTGAAGTTAGGCCAAGCTTTGTCCCAGAAGTTGCTGGGAAGCACTGTGTTGCTAACTTTGAGGAGCGGTGGACTACCATGCCCTTGCTGGATTCTCCATCTGCTAGTCCCAAAAAACATGACAATTCCTTGCGATAA 1464 0.4105 MLLKILNHFSDFYQRTMVSSQFSTLNGDSSQKPFLNQLLLPNGPPDLLPSDFVDFEFSDVFGLSPVEASMAVSSQKLGNLVVSPGSSEMIYNDPAIIHIRSHSLLAPSTSISQSLELSKLTLYETGDALDIVKEVFRETQKELKEHSVNNASEEQSSLQFNNYGLNYQTIGVEDFEVLKVVGQGAFGKVYQVKRAGTSEIYAMKVMCKDKIMQGSHAEYVKSERDILTKVDHPFVVRLRYSFQTCRPNVGCTLCLILLMVVTFFFIYITKAYSDLARFYAAEIICAVSYLHANGIMHRDLKPENILLDSDGHVVLTDFGLAKKFNETARSNSMCGTLEYMAPEIVMGKGHDKAADWWSVGILLFEMLVGKLPFTGGNRQKIQQKIIKDKMKLPAFLSSEAHSLLKGLLQKDASKRLGSGPSGSEEIKSHKWFKSVHWKKLEAREVRPSFVPEVAGKHCVANFEERWTTMPLLDSPSASPKKHDNSLR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00050 487 Pfam Protein kinase domain 175 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3887g00050 487 CDD STKc_AGC 181 432 IPR045270 GO:0004674|GO:0005524
Gabi3887g00050 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Gabi3887g00050 487 Gene3D Transferase(Phosphotransferase) domain 1 260 451 - -
Gabi3887g00050 487 FunFam Non-specific serine/threonine protein kinase 261 451 - -
Gabi3887g00050 487 PANTHER RIBOSOMAL PROTEIN S6 KINASE 140 478 - -
Gabi3887g00050 487 ProSiteProfiles AGC-kinase C-terminal domain profile. 433 487 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi3887g00050 487 Gene3D Phosphorylase Kinase; domain 1 173 475 - -
Gabi3887g00050 487 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524
Gabi3887g00050 487 SUPERFAMILY Protein kinase-like (PK-like) 158 479 IPR011009 -
Gabi3887g00050 487 SMART serkin_6 175 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3887g00050 487 SMART pkinase_C_6 433 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi3887g00050 487 ProSiteProfiles Protein kinase domain profile. 175 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00050 Gabi-Chr3887 382583 386294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00050 17 479 AGC Kinase Gene Family AT3G08720 58.244 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Gabi3887g00050 Pkinase 5.8e-66 CL0016