Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00047 ATGAAGTTCAAGTTCTCTATTGTTCCATTTGTTCTGCTAAGCTTCACTTTGTCTCTGTTTGGCTTGATTGTAGCAGACTTGAACTCTGACAGACAAGCTCTCCTTAAGTTTTCTTCTAGTGTCCCACATGCCCCAAGGCTAAATTGGAATGAATCTACTCCAATTTGCACTTCATGGGTTGGTGTGACTTGCAATTCAAATGGAACTCGTGTCATTGGCATCCATCTTCCAGGGATTGGATTCAAGGGCTCCATTCCAGAGAACATCCTAGGAAAACTAGATGCTCTTAGAATCCTGAGCCTTCATTCCAATGACCTTAGAGGAAATCTTCTTTCTGACATCCTTTCCATTCCTTCACTCCAATATGTATACCTACAGCACAATAACTTCTCAGGTCCAATCCCTTCCTCTATCTCCCCTAAACTCATTGCATTGGATATTTCCTTTAACTTCTTCTCCGGGAGTATACCACCTACATTTCAGAATCTGAGAAGAATCACCCGGTTGTTTCTCCAAAACAATTCCATCTCTGGAGCTATCCCTGACTTCAACCTTCCAAGGCTCAAATATTTGAATTTGAGCTATAATAACTTGAATGGCTCAATTCCAAGTTCCATCAATAAATTCCCATATACTTCTTTTGTTGGGAACTCTCTCTTATGTGGACCACCTCTCAATCATTGTTCTGTAATCTCCCCTTCTCCATCTCCTTCTCCTGTTTACCAACCACTCTCTCCAGCAACTACCCAAACTAAAAAAGGTTCTATACTTGCTCTAGCAATTGGGGGGTGCGCCTTCCTCTCTCTCCTTGTTTTGGTGATCTTTGTATGCTGTTTGAAGAAGAAAAAGAGTAAAAGCAGTGGTATACTGAAAGTAAAGGCATCTTGTGCTGGAAAAACTGAGGTTTCAAAGAGTTTTGGGAGTGGTGTGCAAGAGGCTGAAAAGAACAAGTTGTTCTTCTTTGAAGATTGCTTTTATCGCTTTGACCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATACAAGGCTTCTTTGGAGGAGGGAACATCAGTGGTAGTTAAAAGGTTGAGAGAAGTTATGGCTGGAAAGAAAGAGTTTGAGCAGCAGATGGAGGTTATGGGAAGAATTGGACGACACCCTAATGTCATGTCCCTTCAAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTCTATAACTACATGCCAGGAGGAAGCTTGTTTTCCTTGTTGCATGGAAACAAGGGTGCAGGAAGAACTCCATTAGACTGGGTTTCAAGAATGAAGATAGCACTTGGAGCTGCAAAGGGAATTGCTTCCATTCATTCTGAGGGGGGTCCAAAATTCACTCATGGCAACATCAAGTCATGCAATGTGCTCATAACACAAGAACTTGATGGTTGCATAGCTGATGTTGGACTAAAGCATCTGATGAACCCCTCAGCAACCATGTCAAGGGTCAATGGTTATCTTGCACCTGAAGTTACTGAGTCCCGGAAGATCACACAGAAGTCTGATGTTTACAGCTTTGGGGTGCTCCTTCTTGAAATGCTTACTGGTAAGACCCCACTGGGATATCCAGGGTATGATGACATGGTTGATCTTCCAAGGTGGGTAAGGTCTGTGGTTCGTGAGGAATGGACAGCTGAAGTTTTTGATGAGGAGCTGCTGAGAGGGCAATATGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCTTGTGTGGAAAAGGTTGCAGATGATAGACCAAGAATGGATGAAGCTGTTAGAAACCTAGAGGAAATCAGACACCCTGAGTCAGAGTCTAATGTTCAAACACCATGA 1857 0.4265 MKFKFSIVPFVLLSFTLSLFGLIVADLNSDRQALLKFSSSVPHAPRLNWNESTPICTSWVGVTCNSNGTRVIGIHLPGIGFKGSIPENILGKLDALRILSLHSNDLRGNLLSDILSIPSLQYVYLQHNNFSGPIPSSISPKLIALDISFNFFSGSIPPTFQNLRRITRLFLQNNSISGAIPDFNLPRLKYLNLSYNNLNGSIPSSINKFPYTSFVGNSLLCGPPLNHCSVISPSPSPSPVYQPLSPATTQTKKGSILALAIGGCAFLSLLVLVIFVCCLKKKKSKSSGILKVKASCAGKTEVSKSFGSGVQEAEKNKLFFFEDCFYRFDLEDLLKASAEVLGKGSYGTTYKASLEEGTSVVVKRLREVMAGKKEFEQQMEVMGRIGRHPNVMSLQAYYYSKDEKLLVYNYMPGGSLFSLLHGNKGAGRTPLDWVSRMKIALGAAKGIASIHSEGGPKFTHGNIKSCNVLITQELDGCIADVGLKHLMNPSATMSRVNGYLAPEVTESRKITQKSDVYSFGVLLLEMLTGKTPLGYPGYDDMVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVEKVADDRPRMDEAVRNLEEIRHPESESNVQTP 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00047 618 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Gabi3887g00047 618 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515
Gabi3887g00047 618 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Gabi3887g00047 618 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 411 617 - -
Gabi3887g00047 618 Gene3D Phosphorylase Kinase; domain 1 300 410 - -
Gabi3887g00047 618 Gene3D Ribonuclease Inhibitor 142 229 IPR032675 -
Gabi3887g00047 618 FunFam pollen receptor-like kinase 1 303 410 - -
Gabi3887g00047 618 SUPERFAMILY L domain-like 38 226 - -
Gabi3887g00047 618 PANTHER OS05G0588300 PROTEIN 11 608 - -
Gabi3887g00047 618 ProSiteProfiles Protein kinase domain profile. 335 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3887g00047 618 FunFam Probable inactive receptor kinase RLK902 27 184 - -
Gabi3887g00047 618 Gene3D Ribonuclease Inhibitor 28 141 IPR032675 -
Gabi3887g00047 618 Gene3D Transferase(Phosphotransferase) domain 1 411 617 - -
Gabi3887g00047 618 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524
Gabi3887g00047 618 Pfam Protein tyrosine and serine/threonine kinase 339 603 IPR001245 GO:0004672|GO:0006468
Gabi3887g00047 618 SUPERFAMILY Protein kinase-like (PK-like) 339 605 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00047 Gabi-Chr3887 371393 374820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00047 7 613 Receptor kinase-like Gene Family AT5G58300 60.227 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3887g00047 PK_Tyr_Ser-Thr 4.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00047 - - gmx:100775340 953.74