Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00046 ATGAAGTTCAAGTTCTCTATTGTTCCATTTGTTCTGCTAAGCTTCACTTTGTCTCTGTTTGGCTTGATTGTAGCAGACTTGAACTCTGACAGACAAGCTCTCCTTAAGTTTTCTTCTAGTGTCCCACATGCCCCAAGGCTAAATTGGAATGAATCTACTCCAATTTGCACTTCATGGGTTGGTGTGACTTGCAATTCAAATGGAACTCGTGTCATTGGCATCCATCTTCCAGGGATTGGATTCAAGGGCTCCATTCCAGAGAACATCCTAGGAAAACTAGATGCTCTTAGAATCCTGAGCCTTCATTCCAATGACCTTAGAGGAAATCTTCTTTCTGACATCCTTTCCATTCCTTCACTCCAATATGTATACCTACAGCACAATAACTTCTCAGGTCCAATCCCTTCCTCTATCTCCCCTAAACTCATTGCATTGGATATTTCCTTTAACTTCTTCTCCGGGAGTATACCACCTACATTTCAGAATCTGAGAAGAATCACCCGGTTGTTTCTCCAAAACAATTCCATCTCTGGAGCTATCCCTGACTTCAACCTTCCAAGGCTCAAATATTTGAATTTGAGCTATAATAACTTGAATGGCTCAATTCCAAGTTCCATCAATAAATTCCCATATACTTCTTTTGTTGGGAACTCTCTCTTATGTGGACCACCTCTCAATCATTGTTCTGTAATCTCCCCTTCTCCATCTCCTTCTCCTGTTTACCAACCACTCTCTCCAGCAACTACCCAAACTAAAAAAGGTACCACTTCAAAGAATTACTTTGGCCTAGGTTCTATACTTGCTCTAGCAATTGGGGGGTGCGCCTTCCTCTCTCTCCTTGTTTTGGTGATCTTTGTATGCTGTTTGAAGAAGAAAAAGAGTAAAAGCAGTGGTATACTGAAAGTAAAGGCATCTTGTGCTGGAAAAACTGAGGTTTCAAAGAGTTTTGGGAGTGGTGTGCAAGAGGCTGAAAAGAACAAGTTGTTCTTCTTTGAAGATTGCTTTTATCGCTTTGACCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATACAAGGCTTCTTTGGAGGAGGGAACATCAGTGGTAGTTAAAAGGTTGAGAGAAGTTATGGCTGGAAAGAAAGAGTTTGAGCAGCAGATGGAGGTTATGGGAAGAATTGGACGACACCCTAATGTCATGTCCCTTCAAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTCTATAACTACATGCCAGGAGGAAGCTTGTTTTCCTTGTTGCATGGAAGAACTCCATTAGACTGGGTTTCAAGAATGAAGATAGCACTTGGAGCTGCAAAGGGAATTGCTTCCATTCATTCTGAGGGGGGTCCAAAATTCACTCATGGCAACATCAAGTCATGCAATGTGCTCATAACACAAGAACTTGATGGTTGCATAGCTGATGTTGGACTAAAGCATCTGATGAACCCCTCAGCAACCATGTCAAGGGTCAATGGTTATCTTGCACCTGAAGTTACTGAGTCCCGGAAGATCACACAGAAGTCTGATGTTTACAGCTTTGGGGTGCTCCTTCTTGAAATGCTTACTGGTAAGACCCCACTGGGATATCCAGGGTATGATGACATGGTTGATCTTCCAAGGTGGGTAAGGTCTGTGGTTCGTGAGGAATGGACAGCTGAAGTTTTTGATGAGGAGCTGCTGAGAGGGCAATATGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCTTGTGTGGAAAAGGTTGCAGATGATAGACCAAGAATGGATGAAGCTGTTAGAAACCTAGAGGAAATCAGACACCCTGAGTCAGAGTCTAATGTTCAAACACCATGA 1872 0.4252 MKFKFSIVPFVLLSFTLSLFGLIVADLNSDRQALLKFSSSVPHAPRLNWNESTPICTSWVGVTCNSNGTRVIGIHLPGIGFKGSIPENILGKLDALRILSLHSNDLRGNLLSDILSIPSLQYVYLQHNNFSGPIPSSISPKLIALDISFNFFSGSIPPTFQNLRRITRLFLQNNSISGAIPDFNLPRLKYLNLSYNNLNGSIPSSINKFPYTSFVGNSLLCGPPLNHCSVISPSPSPSPVYQPLSPATTQTKKGTTSKNYFGLGSILALAIGGCAFLSLLVLVIFVCCLKKKKSKSSGILKVKASCAGKTEVSKSFGSGVQEAEKNKLFFFEDCFYRFDLEDLLKASAEVLGKGSYGTTYKASLEEGTSVVVKRLREVMAGKKEFEQQMEVMGRIGRHPNVMSLQAYYYSKDEKLLVYNYMPGGSLFSLLHGRTPLDWVSRMKIALGAAKGIASIHSEGGPKFTHGNIKSCNVLITQELDGCIADVGLKHLMNPSATMSRVNGYLAPEVTESRKITQKSDVYSFGVLLLEMLTGKTPLGYPGYDDMVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVEKVADDRPRMDEAVRNLEEIRHPESESNVQTP 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00046 623 PANTHER OS05G0588300 PROTEIN 11 613 - -
Gabi3887g00046 623 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515
Gabi3887g00046 623 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Gabi3887g00046 623 SUPERFAMILY L domain-like 38 226 - -
Gabi3887g00046 623 FunFam Probable inactive receptor kinase RLK902 27 184 - -
Gabi3887g00046 623 ProSiteProfiles Protein kinase domain profile. 345 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3887g00046 623 ProSitePatterns Protein kinases ATP-binding region signature. 351 382 IPR017441 GO:0005524
Gabi3887g00046 623 Gene3D Ribonuclease Inhibitor 142 229 IPR032675 -
Gabi3887g00046 623 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 421 622 - -
Gabi3887g00046 623 Gene3D Ribonuclease Inhibitor 28 141 IPR032675 -
Gabi3887g00046 623 SUPERFAMILY Protein kinase-like (PK-like) 349 610 IPR011009 -
Gabi3887g00046 623 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Gabi3887g00046 623 FunFam pollen receptor-like kinase 1 313 420 - -
Gabi3887g00046 623 Pfam Protein tyrosine and serine/threonine kinase 349 608 IPR001245 GO:0004672|GO:0006468
Gabi3887g00046 623 Gene3D Phosphorylase Kinase; domain 1 310 420 - -
Gabi3887g00046 623 Gene3D Transferase(Phosphotransferase) domain 1 421 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00046 Gabi-Chr3887 371393 374820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00046 7 618 Receptor kinase-like Gene Family AT5G58300 60.161 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3887g00046 PK_Tyr_Ser-Thr 1.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00046 - - gmx:100775340 958.747