Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00044 ATGGGGAGAAGACCTGCAAGATGTTATCGTCAAATTAAAAACAAGCCATACCCCAAGTCACGGTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGACGTTGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTCTCAAGCGAGGCACTGGAAGCTGCTAGGATTGCTTGCAACAAATATATGGTCCTTCTTTCTGTCCGTTGTAAGGACAGCAACAACCATCATGCACAGGAGGCACTTCGTCGTGCTAAGTTTAAGTTCCCCGGTCGTCAAAAGATTATAGTTAGCAGGAAGTGGGGATTCACCAAGTTTAACCGCAATGATTATCTGAAGTTCAAGTCAGAGAACAGGATCATGCCTGATGGTGTGAATGCAAAGCTTCTTGGGTGCCATGGACGATTGGCGAACCGCCAGCCTGGAAGAGCCTTTTTGAATGCCACTTCTGCTTAG 495 0.4586 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVLLSVRCKDSNNHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRNDYLKFKSENRIMPDGVNAKLLGCHGRLANRQPGRAFLNATSA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00044 164 Gene3D Ribosomal protein L10e/L16 1 77 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gabi3887g00044 164 SUPERFAMILY Ribosomal protein L16p/L10e 4 116 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gabi3887g00044 164 PANTHER 60S RIBOSOMAL PROTEIN L10 1 77 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gabi3887g00044 164 Gene3D - 122 157 - -
Gabi3887g00044 164 CDD Ribosomal_L16_L10e 41 109 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gabi3887g00044 164 Pfam Ribosomal protein L16p/L10e 12 77 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gabi3887g00044 164 FunFam 60S ribosomal protein L10, putative 118 160 - -
Gabi3887g00044 164 Gene3D Ribosomal protein L10e/L16 78 121 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00044 Gabi-Chr3887 357591 359854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00044 38 161 Cytoplasmic Ribosomal Protein Gene Family AT1G14320 85.484 2.13e-77 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00044 K02866 - osa:107277419 274.633