Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00040 ATGGAAAATTTGGATGCTAATTCAGACCAGTACGCTACCATTTCTCCTAATTTATCATCATCATCATCATCATCTGGAGGTGTTAATAGTAATGATAACAATGGTAACAGTAATAGTAATAGCAGTGTTGGCACTGGTCCCTGGTATGGGATGAGGTTGCCCTCTGTTAGCCCCTTTCGTTCTCCACTTTCCTTTTTGTTGGATTACTCTGGCATTCTACGCTCACCCCATGATTCTGAGGCTGTGATTGTCAACAATGGAGTTCCTGGTTCGGAATTAAGGTCTCAGCTTCAAACTGGGTCGTTTGATGCTGCTGCTGATGCTGGGAACAGTGCAGGGGAAGTTGCAATAAGGATCATTGGAGCTGGAGAGCATGATCAGAATCAGCTTGGAGAAGTGGGGCATGATGATTGTGATGATCTGATGGATGATAGAGGTGGAATGCCTGCATTGGATGATGATGATGATGCTGGGGGTCGTGGTAGAAATGCTGTTGGTGAGAGGGTTCCTTTGGTGTCTTCGTCTTCACCATTGGCTGGTAGTGGACAGGTTGGTGGTGATGCTGCTGGGAATGGTAACAGTAGGGATTCATCATCCTACCAGAGGTATGATATTCAGCAAATTGCCAAGTGGATTGAGCAAATTCTTCCTTTCTCGCTCTTGTTGGTGGTTGTTTTCATCCGACAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAATCAAATGAAATTGTTAAGAAACAGACAGCTTTAAAGGGAGATAGGAAAGTGTCTATCCTTATTGGCATTGCTTTTGCTTTCATGCTTCACGTGATGTGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGTCATGCTTCCTCCAAAAGCAACACCTTTCTGGCATGCCATATTCATCATCTTGGTTAATGATACATTGGCACGGCAAGCTGCAATGGCTTTCAAGTGTTTCCTGCTTATATATTACAAAAATGGCAAAGGTCATAACTTCCGTCGGCAGGCTCAAATGTTAACTCTGGTTGAGTACACGCTGCTGTTGTATCGTGCTTTGTTGCCAACCCCAGTTTGGTACCGGTTTTTCTTGAACAGGGATTATGGCAGTCTCTTTTCGTCACTGACCACTGGATTGTATCTAACTTTCAAGCTAACATCTGTAGTTGAGAAGGTCCAATGTTTCGTTGCTGCCTTGAAGGCTTTATCAAGAAAGGAAGTTCATTATGGGGTTAATGCCACAATGGAGCAGGTTAATGCTGCTGGTGACCTATGCGCTATATGCCAGGAGAAGATGCATACCCCTATCTTGTTGCGCTGTAAACACATTTTTTGCGAAGAGTGTGTATCAGAGTGGTTTGAGAGAGAAAGGACTTGCCCACTATGCAGAGCATTGGTTAAACCTGCTGATCTTCGGACCTTTGGAGATGGATCAACAAGTCTATTTTTCCAGTTGTTTTAA 1482 0.4345 MENLDANSDQYATISPNLSSSSSSSGGVNSNDNNGNSNSNSSVGTGPWYGMRLPSVSPFRSPLSFLLDYSGILRSPHDSEAVIVNNGVPGSELRSQLQTGSFDAAADAGNSAGEVAIRIIGAGEHDQNQLGEVGHDDCDDLMDDRGGMPALDDDDDAGGRGRNAVGERVPLVSSSSPLAGSGQVGGDAAGNGNSRDSSSYQRYDIQQIAKWIEQILPFSLLLVVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSILIGIAFAFMLHVMCIYWWYRNDDLLYPLVMLPPKATPFWHAIFIILVNDTLARQAAMAFKCFLLIYYKNGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVAALKALSRKEVHYGVNATMEQVNAAGDLCAICQEKMHTPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00040 493 MobiDBLite consensus disorder prediction 1 42 - -
Gabi3887g00040 493 MobiDBLite consensus disorder prediction 129 162 - -
Gabi3887g00040 493 SUPERFAMILY RING/U-box 423 475 - -
Gabi3887g00040 493 MobiDBLite consensus disorder prediction 127 198 - -
Gabi3887g00040 493 Pfam Zinc finger, C3HC4 type (RING finger) 430 473 - -
Gabi3887g00040 493 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 30 493 IPR044235 GO:0061630|GO:1904294
Gabi3887g00040 493 CDD RING-HC_RNFT1-like 430 470 - -
Gabi3887g00040 493 SMART ring_2 432 469 IPR001841 -
Gabi3887g00040 493 MobiDBLite consensus disorder prediction 174 198 - -
Gabi3887g00040 493 ProSitePatterns Zinc finger RING-type signature. 447 456 IPR017907 -
Gabi3887g00040 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 480 IPR013083 -
Gabi3887g00040 493 ProSiteProfiles Zinc finger RING-type profile. 432 470 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00040 Gabi-Chr3887 338465 345540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00040 60 493 C3H Transcription Factor Family AT5G01960 65.011 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00040 - K22379 qsa:O6P43_020068 676.396