Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00036 ATGAAGGTGATTTATTCTTCGGAGTCGATGGACGTCCCTGAGGGGGTGAGCATCAAGGTGCATGCGAAGGTGGTCGAGGTGGAGGGTTCTCGTGGAAAGCTGGTTAAAGATTTCAAGCACATGAAGCTCGATTTTCAGCTCTTCACTGACGAAGACGGCAAGAGGAAGCTTAAGATCGAATCCTGGTTCGGAACTCGCAAGACCACCGCTCTCATTCGCACTGCCATTTCTCACATCGAGAATCTTATCACCGGTGTCACCAAGGGTTACCGCTACAAGATGCGTTTTGTCTATGCTCACTTTCCAATCAACGCTAGCATCACCAATAACAACGCCTCCATCGAGATCCGAAATTTCCTTGGTGAAAAGAAGGTGAGGAAAGTGGACATGCTTGAAGGTGTTTCTGTTGGTCGATCTGAAAAGGTCAAGGATGAATTGATTTTGGATGGAAATGACATTGAGCTCGTTTCCCGCTCCTGTGCCCTCATTAACCAGAAATGCCATGTTAAAAACAAAGATATCCGGAAGTTCCTTGATGGTATCTATGTTAGCGAGAAGGGGACAATTGAAGAGTAA 576 0.4635 MKVIYSSESMDVPEGVSIKVHAKVVEVEGSRGKLVKDFKHMKLDFQLFTDEDGKRKLKIESWFGTRKTTALIRTAISHIENLITGVTKGYRYKMRFVYAHFPINASITNNNASIEIRNFLGEKKVRKVDMLEGVSVGRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIEE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00036 191 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Gabi3887g00036 191 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi3887g00036 191 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi3887g00036 191 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi3887g00036 191 Gene3D - 90 191 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi3887g00036 191 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi3887g00036 191 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi3887g00036 191 FunFam 60S ribosomal protein L9 1 89 - -
Gabi3887g00036 191 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi3887g00036 191 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gabi3887g00036 191 FunFam 60S ribosomal protein L9 90 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00036 Gabi-Chr3887 327783 329416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00036 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 78.125 1.38e-110 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00036 K02940 - csav:115716386 327.405