Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00015 ATGATTGATATTCCCTTTATCTTCTCGCGTGCAATGGCTTTCTTATGCTATATCTTTCTCATATTTTGCTTGTTTGATATTCTGGCCTCAATTGGGCCATATCCAGTTGCAATTTGTTCAGCTAGTGATGTTCCAATTAATGTGACCAAGCACTTTTACTTTCCCGATTTCAGCTTAAGAAATAACCCCAGACTTGTCCATGATGTGAAGCTGCTAGGGAGTTCCAAGTTCTCAAATGAAAAGGGTGCTCTTCAAATCCCAAATGAATCACAAGATACAGATATAAGACATCAAGCAGGTCGAGGTATCTATTCCTTCCCAATTCGCCTGTTAGATCCAAGTACAAAGACCCCAGCTTCCTTTGAAACAACCTTTTCTTTTCAGTTGAACAATTCCACCAACTCTGAACAAGGTGCTTATGGTGGTAGTGGCCTCACTTTCATCATTGTTCCTGATGAGTTCACTGTGGGAAGGCCAGGGCCCTGGCTTGCCATGCTCAATGATGCCTGTGAGGATGATTACAAGGCAGTGGCTGTAGAGTTTGACACGAGAATGAACCCAGAATTTGGAGATCCAAATGACAACCATGTTGGCATCAACTTAGGTACCATAATATCCACTAAAATTATCAATGTTTCTGATGTTGGAGTGTCCCTTAAGGATGGTTTTGTTCACCGTGCTTGGATCAACTATGATGGTCCTCAAAGGAGAATGGACATTCGTCTTGGACTAGCCAACCAAGAAGTTTATCCATCCAACCCTATCTTCTCGGAATCTTTAGATCTCTCTCCTTATCTAAATGAGTACATGTTTGTGGGGTTCTCAGCCTCTACAGGTAACCATACCCAAATCCATAACATACTCTCTTGGAACTTCACTTCCACCAGCCAAGCTTTTCTTCGCTTCCCTTCATCTGAAACCTGCCAGGGTAAGATCTTACTTGAGAATAGTACTGAAACAATTACCAAGAAGTCTACTAAGGATGAACCACCACGCAGTTTTTTGATTTTTGTGGCTGTAGTGGCATTGGCTCTGGCTGTTTTCCTTGGTTTTTACTTTATCAGTAAGCATAGAAGAAATGCTGCCAAATCAAAGACTTCAGTGGAGGCAGAGATTCACAGGCCAAGGCCTCCCAACAAACCACGCCGCTTCACTTTTTCTGAACTTTCCTCTTCTACTCGATCTTACAATGAGATAGAGTTGCTTGGTAGTGATTCTAGAGGAGTATACTACAGAGGAAAGCTTTCTAATGGAAGCCAGGTAGCTGTGAAAAGGTTCTCAGCTCAGTTTCTAAACACACATGGATCAGATAGGAGACGTTTGTTAAAGGAAATTAAGACCATTAGCCAGGTTCGCCACCCAAATTTGCTTCCTGTGAGAGGCTGGTGTCAAGACAACCATGAAATCATGGTGGTCTATGAGTTTGTCCCCAATGGTAGCCTAGATAAATGGCTATTTGGGGCTGGTGTTCTTCCATGGACTCGGCGATTCAAAGTTATTAAAGATGTAGCTGATGGCTTGAGCTTCCTCCACACTAAGCAACTAGCACACAAGAACTTGAAATGCAGCAGTGTGTTTCTAGATGTCAGTTTCAGAGCTGTGTTGGGTGATTTTGGGTTTGTGCTTTTGGGGGCAGAATCAAAACAGTTTGAGTCAGCAGTGTGTCAAGGTGCGGATGTGTTTGAGTTTGGTGTCCTTGTGTTGGAAGTGATAGCTGGAAGGATAAGGGATGAGATAGAGCAGGAAAAACCAGAAGAGAGAAACTTATTGGATTTTGCTTGGAACTTGCACCAGATTGATGAGAAAGTGAAGCTGGTCGACAGAAGGATGGGATCGTTGATCAACTTGGAGCAGGCAATTCGTGTTGTGGAAATTGGTTTGCTTTGCACTCTAAACGAGAACAAAGGGAGACCCTCTATGGAGCAAGTGGTAGACCTTCTTCTTAACATGGAGAAGCCCATTCCTGAGCTGCCAAGAACTCGCCCTGTTGCCTTGTATCCCTATAATAGCGCCAACTCTGGCCTTTGCAATACATACTCTTGTACTTTTTAG 2052 0.4318 MIDIPFIFSRAMAFLCYIFLIFCLFDILASIGPYPVAICSASDVPINVTKHFYFPDFSLRNNPRLVHDVKLLGSSKFSNEKGALQIPNESQDTDIRHQAGRGIYSFPIRLLDPSTKTPASFETTFSFQLNNSTNSEQGAYGGSGLTFIIVPDEFTVGRPGPWLAMLNDACEDDYKAVAVEFDTRMNPEFGDPNDNHVGINLGTIISTKIINVSDVGVSLKDGFVHRAWINYDGPQRRMDIRLGLANQEVYPSNPIFSESLDLSPYLNEYMFVGFSASTGNHTQIHNILSWNFTSTSQAFLRFPSSETCQGKILLENSTETITKKSTKDEPPRSFLIFVAVVALALAVFLGFYFISKHRRNAAKSKTSVEAEIHRPRPPNKPRRFTFSELSSSTRSYNEIELLGSDSRGVYYRGKLSNGSQVAVKRFSAQFLNTHGSDRRRLLKEIKTISQVRHPNLLPVRGWCQDNHEIMVVYEFVPNGSLDKWLFGAGVLPWTRRFKVIKDVADGLSFLHTKQLAHKNLKCSSVFLDVSFRAVLGDFGFVLLGAESKQFESAVCQGADVFEFGVLVLEVIAGRIRDEIEQEKPEERNLLDFAWNLHQIDEKVKLVDRRMGSLINLEQAIRVVEIGLLCTLNENKGRPSMEQVVDLLLNMEKPIPELPRTRPVALYPYNSANSGLCNTYSCTF 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00015 683 ProSitePatterns Legume lectins beta-chain signature. 177 183 IPR019825 -
Gabi3887g00015 683 FunFam Lectin-domain containing receptor kinase A4.2 476 655 - -
Gabi3887g00015 683 Gene3D - 48 299 - -
Gabi3887g00015 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 51 296 IPR013320 -
Gabi3887g00015 683 PANTHER - 88 649 - -
Gabi3887g00015 683 Pfam Protein tyrosine and serine/threonine kinase 400 541 IPR001245 GO:0004672|GO:0006468
Gabi3887g00015 683 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 49 302 - -
Gabi3887g00015 683 CDD lectin_legume_LecRK_Arcelin_ConA 51 295 IPR001220 GO:0030246
Gabi3887g00015 683 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 358 475 - -
Gabi3887g00015 683 Pfam Legume lectin domain 51 297 IPR001220 GO:0030246
Gabi3887g00015 683 SUPERFAMILY Protein kinase-like (PK-like) 375 647 IPR011009 -
Gabi3887g00015 683 MobiDBLite consensus disorder prediction 364 378 - -
Gabi3887g00015 683 ProSiteProfiles Protein kinase domain profile. 396 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3887g00015 683 MobiDBLite consensus disorder prediction 364 384 - -
Gabi3887g00015 683 Gene3D Transferase(Phosphotransferase) domain 1 476 656 - -
Gabi3887g00015 683 Gene3D Phosphorylase Kinase; domain 1 366 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00015 Gabi-Chr3887 210447 212919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00015 51 663 Receptor kinase-like Gene Family AT5G55830 31.538 6.05e-93 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi3887g00015 PK_Tyr_Ser-Thr 1.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00015 - - gmx:100807767 1159.05