Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00011 ATGGGTGCTGCCGTGGATTGTTATGCGCCGCCGCCGCCGCGTAGGGATGAGATCGCAGTGTTGTCTCTAAATTCGTTGCCGTTGGGTTTTCGATTCCGTCCCACCGACGAGGAGCTCGTGGATTACTATTTGCGCCAAAAGATCAATGGAAATGGAGCTGATGTTTGGGTAATTCGCGAAATTGATGTTTGCAGATGGGAGCCATGGGATTTGCCTGATTTGTCGGTGGTAAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCTCAAGACCGCAAGTATCCAAATGGACACAGGTTGAACCGAGCAACGAGTCATGGTTATTGGAAGGCAACGGGCAAGGATCGTAGGATTAAGTCTGGTTCCACCTTGATTGGAATGAAGAAGACTTTAGTTTTCTACACTGGTCGTGCTCCCAAAGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGGCCTACCCTCAAGGAGCTTGATGGCACCAATCCTGGACAGAATCCATATGTTCTCTGTCGATTATTTAAGAAACAAGATGAGAGTCTTGAAGCTTCAAACTGTGACGAAGTGGAGCAGACTGCTTCAACTCCTACAACTGCCAATAACTCTCCAGAAGAAATACAATCTGATCCAACTCTCGTTCCAGTGTCTTCCTCACAGGCCACAGAAGACGATAAGCACCTAGTAGTTATCGCTGAGAACTCTGAGGAAGCAATATCCAACGTTATAACCCCAGTTGATTGCCATAGCAACGGCTGTGATGCTTATGATGCACTAAATCAAATTGTACAGCCGGCTGCAGAGGAGGATCAGCTATTGAACTTGGACATATTTTATGACCTAAATGGGCAATGGGATGACAAATTATTCTCCCCACTCAACGTGATTCCACCAGAATTTTATTATCAAGCAAACAATGAATTAGATGGCTGTTGTGGGCCGCAACATCAGTATGGTACAAATGAGACTAATATTTTAGACTACTTTGATTCGGTTGTTAATTGGGATGAGTGCTCCTATGAGCGGTCCAGCTGTCTAAAGCCGAACTCAACTGTGCTTGATGTTGAGGACAATGGATCATGCATTGACTCCGATGTGGGAATGGCCAATATGAGGCTTCGACAATCATTACATGGTACTTATCCTAAGGAGGCAATTGAACAGAAGAGCGATGTAGGATTATTTCAGAACAATTCCCAGATGGCTTTGTCAACTGATGTTAGTATGGGCCAAGTGTACAATGATTACGAGCAATCAAGGAACTATGATACGGTTGACACTGGAATCAGGATAAGGAATCGACAAGGACGAAATGAACCGGATATGGTTCAAAACCCTATGATGGGGCAAGGTGATGCACCAAGAAGATTACGATTGGTTGTTGCGCATCAGCTTGATTCCAATGAGACGGCAAAAGATGGGAGTTGTACACCAGAAGACCATGATTCAAAAACCACCATTGCTGGGGAGAGGGAAGCTTCAGAAAACCATGCTGCTGTTGAGAATGCCTCTGATGCTGATGCTAATGATGTGGATGAACAGGAGAAGACATCTCCTCAGTCAGCTGAAACAAGAAAGATTTCTCAGCAACATGTTGCAACTGCGGAATCCATCTTTGGGTTAAAAGACTTTTTATTGGAGGAGAGAAGGGTCCGTTACACATCAAAGGCTTCCACCAATCGTGCTATGTGGTCTTCTGTTCTTGCAGTTTCCGCCATTGTACTGGTCTTACTAGTAGTCGTTGTTAATATATGCGGATATCTTAGAATTTCTACTGCGTACTAG 1782 0.4478 MGAAVDCYAPPPPRRDEIAVLSLNSLPLGFRFRPTDEELVDYYLRQKINGNGADVWVIREIDVCRWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRRIKSGSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLEASNCDEVEQTASTPTTANNSPEEIQSDPTLVPVSSSQATEDDKHLVVIAENSEEAISNVITPVDCHSNGCDAYDALNQIVQPAAEEDQLLNLDIFYDLNGQWDDKLFSPLNVIPPEFYYQANNELDGCCGPQHQYGTNETNILDYFDSVVNWDECSYERSSCLKPNSTVLDVEDNGSCIDSDVGMANMRLRQSLHGTYPKEAIEQKSDVGLFQNNSQMALSTDVSMGQVYNDYEQSRNYDTVDTGIRIRNRQGRNEPDMVQNPMMGQGDAPRRLRLVVAHQLDSNETAKDGSCTPEDHDSKTTIAGEREASENHAAVENASDADANDVDEQEKTSPQSAETRKISQQHVATAESIFGLKDFLLEERRVRYTSKASTNRAMWSSVLAVSAIVLVLLVVVVNICGYLRISTAY 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00011 593 MobiDBLite consensus disorder prediction 184 220 - -
Gabi3887g00011 593 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 25 229 - -
Gabi3887g00011 593 FunFam Nac domain-containing protein 86 35 179 - -
Gabi3887g00011 593 Pfam No apical meristem (NAM) protein 27 152 IPR003441 GO:0003677|GO:0006355
Gabi3887g00011 593 MobiDBLite consensus disorder prediction 490 528 - -
Gabi3887g00011 593 ProSiteProfiles NAC domain profile. 26 176 IPR003441 GO:0003677|GO:0006355
Gabi3887g00011 593 SUPERFAMILY NAC domain 21 176 IPR036093 GO:0003677|GO:0006355
Gabi3887g00011 593 Gene3D NAC domain 35 180 IPR036093 GO:0003677|GO:0006355
Gabi3887g00011 593 MobiDBLite consensus disorder prediction 186 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00011 Gabi-Chr3887 143283 146927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00011 18 497 NAC Transcription Factor Family AT4G35580 41.107 2.85e-96 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3887g00011 NAM 4.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00011 - - gmx:100778903 765.377