Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00005 ATGGGAGAGGGAGAGAGCATAGTAGAAGTCGAGGTAGAAGGAGAAGGAGAAGAGAAGGAGACAACATCAACATGGAACCTTGGGAAACATAGCCAGATAGTGCAGTTATCGGAGAAGCTGATGAATGGGAACCTTAACTCGAAGATAGAAGCTGCCAGAGAAATTAGGAAGGTTGTTCGCAAATCATCATCGTCTAAGACACGCTCCAAATTCGCCGCTGCTGGTGTCATTCAACCACTTGTCTTCATGCTCTCTTCTTCCAACATCGATGCACGTGAATCTTCTCTCCTCGCTCTCCTCAATCTCGCTGTTCGCAACGAACGAAACAAGGTCAAAATAGTGACAGCTGGTGCCATGCCTCCTCTGGTGGAGCTCCTCAAGATGCAAAACAGTAGTATAAGAGAATTAGCTACGGCAGCAATCTTGACACTCTCAGCTGCTGCAGCCAACAAGCCCATTATTGCTGCTTCTGGAGCTGCACCTCTCCTTGTTCAGATTCTCAACTCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGTCCTCCATAATCTTTCCACTAGCATTGAGAATTCCACTGAACTTATTGATGCTAGTGCTGTTTCCCCTCTTATCAATCTCCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCTACAGCATTACTTGAACTCCTTTCCAACTCCGAAGAGGGACGAAATGCAATCTCGAATGCAGATGCTGGAATTTTAACCCTAGTAGAAACAGTTGAAGATGGATCACTTGTCAGCACAGAGCATGCTGTTGGAACTTTGCTATCATTATGTCAAAGCTGCCGAGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCAATCCCGGGTCTGTTACGACTGACAGTGGAGGGCACAGCTGAAGCTCAAGAAAGAGCCCGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCAGAAAAAAGACTAGCCCCCTCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGGGTAGATGGAGTAGATAAAGCTGCTGAAACTGCCAAAAGGTTATTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAACTGCATCCAGCATAGGGCTGCATCTTGTACTCCTTCTGTGATTCCATCCACTTGA 1149 0.4534 MGEGESIVEVEVEGEGEEKETTSTWNLGKHSQIVQLSEKLMNGNLNSKIEAAREIRKVVRKSSSSKTRSKFAAAGVIQPLVFMLSSSNIDARESSLLALLNLAVRNERNKVKIVTAGAMPPLVELLKMQNSSIRELATAAILTLSAAAANKPIIAASGAAPLLVQILNSGSVQGKVDAVTVLHNLSTSIENSTELIDASAVSPLINLLKECKKYSKFAEKATALLELLSNSEEGRNAISNADAGILTLVETVEDGSLVSTEHAVGTLLSLCQSCRDKYRELILKEGAIPGLLRLTVEGTAEAQERARVLLDLLRDSPPEKRLAPSVLEKIVYDIAERVDGVDKAAETAKRLLQDMVQRSMEHSMNCIQHRAASCTPSVIPST 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00005 382 SUPERFAMILY ARM repeat 35 340 IPR016024 -
Gabi3887g00005 382 SMART arm_5 231 272 IPR000225 GO:0005515
Gabi3887g00005 382 SMART arm_5 188 230 IPR000225 GO:0005515
Gabi3887g00005 382 SMART arm_5 105 146 IPR000225 GO:0005515
Gabi3887g00005 382 SMART arm_5 64 104 IPR000225 GO:0005515
Gabi3887g00005 382 SMART arm_5 147 187 IPR000225 GO:0005515
Gabi3887g00005 382 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3887g00005 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Gabi3887g00005 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 159 IPR000225 GO:0005515
Gabi3887g00005 382 PANTHER U BOX DOMAIN-CONTAINING 31 315 - -
Gabi3887g00005 382 FunFam U-box domain-containing protein 4 8 373 - -
Gabi3887g00005 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 75 117 IPR000225 GO:0005515
Gabi3887g00005 382 Gene3D - 31 220 IPR011989 -
Gabi3887g00005 382 MobiDBLite consensus disorder prediction 1 16 - -
Gabi3887g00005 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 199 243 IPR000225 GO:0005515
Gabi3887g00005 382 Pfam Armadillo/beta-catenin-like repeat 106 145 IPR000225 GO:0005515
Gabi3887g00005 382 Gene3D - 221 366 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00005 Gabi-Chr3887 51449 56484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00005 31 315 U-box Gene Family AT3G54790 38.462 3.65e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00005 K08332 - gmx:100782472 586.26