Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00002 ATGGGCCTCTCAAGTCTCCCAGCACCATCCGAAGGAGTATTATGTGTACTTCTGGTAAACACTGTATTGTCGATATCCATATTTAAAGGCATTGTTAGGACAATCCTACACATTGTTGGTATCCATCTTTCATCATCCACCACTTCATCCCCTTCACCAGAAGCATCCCAAAACCCATCTGAGTCATTTGAATTCCATCATAGTCCCTCAGAGAGTTACTTTGAAGAGTTTAGAAGCCGGACACCAACACTTAGGTTTGACAGTGTGTGTTGCTGTAAACAACCTGAACATGATTGCTCTGTATGTCTTACTCAGTTTGAACCAGAATCAGAGATAAACCGTTTATCTTGTGGCCATCTCTTCCATAAAGTATGCTTGGAGAAGTGGTTGAACTACTGGAACGTTACATGCCCACTTTGCAGGACTCCCTTAATGCCTGAAGATGATGATACATCTCGCTTTCAGTGA 468 0.4252 MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSTTSSPSPEASQNPSESFEFHHSPSESYFEEFRSRTPTLRFDSVCCCKQPEHDCSVCLTQFEPESEINRLSCGHLFHKVCLEKWLNYWNVTCPLCRTPLMPEDDDTSRFQ 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00002 155 PANTHER - 1 149 IPR044249 -
Gabi3887g00002 155 Pfam Ring finger domain 98 141 IPR001841 -
Gabi3887g00002 155 MobiDBLite consensus disorder prediction 45 66 - -
Gabi3887g00002 155 SUPERFAMILY RING/U-box 94 147 - -
Gabi3887g00002 155 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Gabi3887g00002 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 150 IPR013083 -
Gabi3887g00002 155 SMART ring_2 99 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00002 Gabi-Chr3887 25572 27422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00002 1 152 C3H Transcription Factor Family AT2G04240 63.291 3.61e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00002 K16285 - gmx:100786803 269.626