Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3887g00001 ATGGGTTATTCATGTGATTTTTGTGGAGAGCAGAGGTCCTTGGTGTACTGCCGCTCTGATGCTGCCTGCTTATGTCTGTCATGCGATCGAAATGTTCATTCTGCGAATGCACTTTCTAGGCGTCATTCAAGAACCCTTGTATGTGAGAGATGTAATTCACAACCTGCATTTGTGAGGTGTACTGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGTACCTCTCCATCTTCTTCAATGCATAAAAGGCAAACAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTCAGATATCCCCGCTGTGGGTGAAACATGTGAGCAGGAACTAGGTTTAATGAGCATTAATGAGAACAGCAACAAGAGCGGTTGGGTTCCTTCAGAAAACCAGAATGCCTCTGGTTCAGCTGAAGTGACTGATCTAAGCATCAAGGATAAATCTTGGGTTGGTGCATCTTCAATACCTGAGTCAAGCTCAGAACCTCATATTCTGGACCAGCTCAATGAATGTATGCCCAAGTTATACTGTCCCGGTAAAAAAGCTCCTAGGCTATGTGAAGATGATAATCTGTATGATGATTTCAACATGGATGAAGTGGATCTAGATGTTGAGAACTATGAGGAACTTTTTGGTATGACTCTCACTCATTCTGAAGACCTGTTTGAACATGGTGGAATTGATAGCTTATTTGGGACAAAGGACATGTCTGCTAGTGCTGGTGATTCCAATTGTCAGGGTGGTGTTGCTGCTGAGGTCAATGCTATGCAACCAGCATGCAGCGCAGCATCTGTAGATTCAATTTTGAGTTCCAAAACTGAACCAGTTGTTTGTTTTGCGGCAAGTCAATCCCAATCAAACATCTCTTTTTCTGGAATTGCTAAAGATAGTAGTGCTGCTAACCATCAAGACTGTAGTGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCGTGGTGTCCTCCTTGCACTGAGAGTTCTGTGCAATCTGCTAACCGCAGCAATGCTGTGATGCGTTATAAGGAAAAGAAAAAGACCCGGAAGTTTGAGAAGAGAGTAAGATATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGCCGTTTTGTCAAAGCTGGTGAAATCTTTGATTATGACCCTTTGAGCCAAACCAGAAGCTACTGA 1206 0.4362 MGYSCDFCGEQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCTEEKISLCQNCDWLGHGTSPSSSMHKRQTINCYSGCPSAAEFSSIWSFFSDIPAVGETCEQELGLMSINENSNKSGWVPSENQNASGSAEVTDLSIKDKSWVGASSIPESSSEPHILDQLNECMPKLYCPGKKAPRLCEDDNLYDDFNMDEVDLDVENYEELFGMTLTHSEDLFEHGGIDSLFGTKDMSASAGDSNCQGGVAAEVNAMQPACSAASVDSILSSKTEPVVCFAASQSQSNISFSGIAKDSSAANHQDCSASSMLLMGEPPWCPPCTESSVQSANRSNAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAGEIFDYDPLSQTRSY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3887g00001 401 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 388 - -
Gabi3887g00001 401 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gabi3887g00001 401 SMART bboxneu5 48 90 IPR000315 GO:0008270
Gabi3887g00001 401 ProSiteProfiles CCT domain profile. 344 386 IPR010402 GO:0005515
Gabi3887g00001 401 CDD Bbox1_BBX-like 5 47 - -
Gabi3887g00001 401 ProSiteProfiles Zinc finger B-box type profile. 5 47 IPR000315 GO:0008270
Gabi3887g00001 401 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Gabi3887g00001 401 CDD Bbox1_BBX-like 47 90 - -
Gabi3887g00001 401 Pfam CCT motif 344 386 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3887g00001 Gabi-Chr3887 19329 24219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3887g00001 1 401 C2C2-CO-like Transcription Factor Family AT3G07650 55.769 5.75e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi3887g00001 CCT 2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3887g00001 - - gmx:100783016 664.455